BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3986.p (596 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 301 7e-83 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 214 1e-56 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 144 1e-35 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 136 3e-33 gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 116 2e-27 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 301 bits (770), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 218/581 (37%), Positives = 318/581 (54%), Gaps = 36/581 (6%) Query: 31 WVTLLSYVGLYAIVALGLVLLTGVAGLISFGQAAFVGIGAYTTAYLTTQFGLSPWIGLLA 90 W+ LL +YA+VALGL +LTG+ GL+S GQA IGAYT+A L+T+FG ++A Sbjct: 38 WMLLL----IYALVALGLNILTGLTGLVSLGQAGLFAIGAYTSAVLSTKFGFGLGTCIVA 93 Query: 91 GIALTALSAFLIGALTMRISGHYLPLSTIAWGLSLYYLFGNLEML-GKHDGINGIPAIAI 149 + L+A L+ T+R+ G YL + TIA+G+ + + L G +GI+ IP + Sbjct: 94 AMILSAAFGVLLSYPTVRVRGVYLTVITIAFGIIVENVAIEWSSLTGGPNGISSIPTPTM 153 Query: 150 GSVEFGNGPSMYLLIWVVVILALVSVLNFLDSRAGRAVRALRFGTVMPEAMGVDTARLKI 209 + + Y+L + ++ L+ N + SR GRA+RA+ +G++ +++ Sbjct: 154 FGLPLEDTKFFYVLAILFLLAFLLH-YNLIKSRFGRAMRAVSQSETAARTVGINPIVMRM 212 Query: 210 VIFVYAAVLAGISGWLYAHLQQAVNPTPFGLKYGIDYLLMVVVGGAGYVWGALLGAGLLA 269 + FV AA AG +G YA L Q VNP F + +LLMV++GG+G V G LGA +L Sbjct: 213 MSFVIAAAFAGAAGATYAFLNQYVNPDTFRFDDSVRFLLMVILGGSGTVIGPALGATILT 272 Query: 270 VLSNFLQEWLPGVLGTGGNFEAIVFGI--ALVIFLQ----FANEGLWPRLQARFGR---- 319 + +LQ + G ++ +G+ ALV+F LW +RF + Sbjct: 273 FIPEYLQSF--------GEWQRFAYGVLLALVMFGMPMGIVGTVNLW---ISRFSKSVNL 321 Query: 320 --RLAPRLPADAAALAQLPKPTRGEVILDVQAARKQFGGLVAVNDVSFSVKAGEIVGLIG 377 R P + AD AL + G L + FGGL+A + VS +KAG + +IG Sbjct: 322 RSRPWPCVNADTEALLK-SDTAAGTTCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIG 380 Query: 378 PNGAGKSTTFNLVTGVLSITSGKLDYRGQSLAGLSSRDIASRGIARTFQHVRLVPGMSVL 437 PNGAGKST N V+G TSG +++ GQ S +A G+ARTFQ+ L M+ L Sbjct: 381 PNGAGKSTFINCVSGFYRPTSGSIEFMGQIATAKQSHQLARMGLARTFQNTELFGDMTCL 440 Query: 438 ENAAMGAFRRGEFAPQRGILASLVR--GNRREEARILSEARRQLERVGLGELMHRPAGSL 495 EN +GA R + G+ A+L+R +E R +EAR LE VGL + A +L Sbjct: 441 ENVLVGADSR----YRSGLFATLLRLPSYFHDERRYAAEARCLLEYVGLDDYAEEKARNL 496 Query: 496 ALGQQRILEIARALCCDPALLLLDEPAAGLRLKEKQALAALLDKLRGEGMAVLLVEHDMD 555 G QR LEIARAL P LLLLDEPAAGL E + L L+ L + VLLVEH +D Sbjct: 497 PFGHQRRLEIARALAMSPKLLLLDEPAAGLTHGEIEDLMKLIRNLASHQITVLLVEHHVD 556 Query: 556 FVMQLTDHIVVMEFGSKIAEGTPAQIQVHPAVLEAYLGGAQ 596 +M ++DH+ V+++G IA GT A+++ +PAV+EAY G + Sbjct: 557 MIMAVSDHVTVLDYGKVIASGTVAEVRSNPAVIEAYFGTGE 597 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 214 bits (545), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 116/257 (45%), Positives = 163/257 (63%), Gaps = 6/257 (2%) Query: 342 EVILDVQAARKQFGGLVAVNDVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSITSGKL 401 ++IL++ K+FGGL A+ DV+ + G+I GLIGPNGAGK+T FN++TG+ SG Sbjct: 8 QIILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSF 67 Query: 402 DYRGQSLAGLSSRDIASRGIARTFQHVRLVPGMSVLENAAMGAFRRGEFAPQRGILASLV 461 + G++ + + +A GIARTFQ++RL M+ LEN +G R +G+ ++ Sbjct: 68 ELAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVR----THQGLFGAVF 123 Query: 462 --RGNRREEARILSEARRQLERVGLGELMHRPAGSLALGQQRILEIARALCCDPALLLLD 519 + R+EEA I + A L+ VG+ + R A L+ G QR LEIARAL DP LL LD Sbjct: 124 HHKAARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALD 183 Query: 520 EPAAGLRLKEKQALAALLDKLRGEGMAVLLVEHDMDFVMQLTDHIVVMEFGSKIAEGTPA 579 EPAAG+ EK L LL K++ EG +LL+EHD+ VM L D I V+++G IAEG PA Sbjct: 184 EPAAGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPA 243 Query: 580 QIQVHPAVLEAYLGGAQ 596 +Q +PAV+EAYLGG+ Sbjct: 244 DVQKNPAVIEAYLGGSH 260 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 150/250 (60%), Gaps = 10/250 (4%) Query: 353 QFGGLVAVNDVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSITSGKLDYRGQSLAGLS 412 +FGGL A++ ++ + GE++GL+GPNG+GK+T FN++TG+ +SG + Y+G+ + G + Sbjct: 31 RFGGLTALDQLNLHIVEGEVLGLLGPNGSGKTTFFNVLTGLYKASSGSIIYQGREVIGQT 90 Query: 413 SRDIASRGIARTFQHVRLVPGMSVLENAAMGAFRRGEFAPQRGILASLVRGN--RREEAR 470 ++I G+ARTFQ RL ++V +N +G ++ Q G+ +L R R E Sbjct: 91 PQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQH----MQHGLFFNLFRRKAFRAEYDA 146 Query: 471 ILS--EARRQLERVGLGELMHRPAGSLALGQQRILEIARALCCDPALLLLDEPAAGLRLK 528 ++ EA + L M P + ++ +R +E+ RAL +P LLLLDEP+AG+ Sbjct: 147 YVAKVEALLHIFSPPLVARMFEPVETFSMIDRRRIEVCRALLSEPRLLLLDEPSAGMTHD 206 Query: 529 EKQALAALLDKLRGE--GMAVLLVEHDMDFVMQLTDHIVVMEFGSKIAEGTPAQIQVHPA 586 E +AL + ++R + + V+L+EH+M+ + ++TD +V +G KIAEGT A+I P Sbjct: 207 ETEALMDDILQVRNKLSNLTVVLIEHEMNVIKRITDRCIVFNYGKKIAEGTYAEITADPN 266 Query: 587 VLEAYLGGAQ 596 V AYLG + Sbjct: 267 VQTAYLGEDE 276 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 136/239 (56%), Gaps = 9/239 (3%) Query: 339 TRGEVILDVQAARKQFGGLVAVNDVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSITS 398 + +V+L Q + +G +A+++V SV GE V ++GPNGAGK+T N++TG+ T+ Sbjct: 2 STNDVLLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTT 61 Query: 399 GKLDYRGQSLAGLSSRDIASRGIARTFQHVRLVPGMSVLENAAMGAFRRGEFAPQRGILA 458 G + + G ++AG+ + D+A+RG+AR FQ + P ++V E A+ A + R Sbjct: 62 GNVHFNGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSAC---SYLNMRWNGF 118 Query: 459 SLVRGNRREEARILSEARRQLERVGLGELMHRPAGSLALGQQRILEIARALCCDPALLLL 518 + G+R+ ++ R + GL + SL G++++L++A A P ++LL Sbjct: 119 GSLFGSRKVNDIVV----RTADAFGLAPWLDTKGSSLPHGRRKLLDVASAFALHPKVMLL 174 Query: 519 DEPAAGLRLKEKQ-ALAALLDKLRGEGM-AVLLVEHDMDFVMQLTDHIVVMEFGSKIAE 575 DEP AG+ +K + LL + G+ A++LVEHDMD V + + I+ M+ G KIA+ Sbjct: 175 DEPTAGVSTADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIAD 233 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 131/255 (51%), Gaps = 19/255 (7%) Query: 343 VILDVQAARKQFGGLVAVNDVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVL--SITSGK 400 +L + + +GG+ AV + V+ GE++ LIG NGAGK+TT +TG L G Sbjct: 4 TVLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRVDGH 63 Query: 401 LDYRGQSLAGLSSRDIASRGIARTFQHVRLVPGMSVLENAAMGAFRRGEFAPQRGILASL 460 ++Y GQ++ GL S ++ + +A + + MS+ EN MGAF R + ++GI + Sbjct: 64 IEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRND---KQGIADDM 120 Query: 461 VRGNRREEARILSEARRQLERVGLGELMHRPAGSLALGQQRILEIARALCCDPALLLLDE 520 + + R ER + AG+L+ G+Q++L +ARAL P LLLLDE Sbjct: 121 --------EKWFAVFPRLKERAA------QMAGTLSGGEQQMLAMARALMSHPQLLLLDE 166 Query: 521 PAAGLRLKEKQALAALLDKLRGEGMAVLLVEHDMDFVMQLTDHIVVMEFGSKIAEGTPAQ 580 P+ GL + + ++ + +G+ +LLVE + +Q VME G +G Q Sbjct: 167 PSMGLSPIMVEKIFEVIRSVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQ 226 Query: 581 IQVHPAVLEAYLGGA 595 + P V EAYLG A Sbjct: 227 MLNDPKVREAYLGEA 241 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.142 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 965,060 Number of extensions: 35029 Number of successful extensions: 335 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 303 Number of HSP's successfully gapped: 47 Length of query: 596 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 509 Effective length of database: 713,682 Effective search space: 363264138 Effective search space used: 363264138 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)