BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3985.p (278 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 207 4e-55 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 193 8e-51 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 181 4e-47 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 139 2e-34 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 112 2e-26 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 207 bits (528), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 107/240 (44%), Positives = 159/240 (66%), Gaps = 3/240 (1%) Query: 25 LLQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASGR 84 +L++ GL YG + A+ L +R G+++T+IG NGAGK+T L A+ G +P G Sbjct: 5 VLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPE-CRVDGH 63 Query: 85 ILFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGAYKRRRNGESGYLDQQD 144 I + G+ + + E V + L++VPE R +FT M++++NLL+GA+ R N + G D + Sbjct: 64 IEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTR--NDKQGIADDME 121 Query: 145 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEILS 204 + +FPRLKER Q AGTLSGGE+QMLA+ RALM+ PQ+L+LDEPS+GL+P++ ++I Sbjct: 122 KWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKIFE 181 Query: 205 IISQLRSTGVATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVESYLGVA 264 +I + + G+ LLVEQNAR ALQ A YV+E G + +G A + D K+ E+YLG A Sbjct: 182 VIRSVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVREAYLGEA 241 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 193 bits (491), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 100/237 (42%), Positives = 153/237 (64%), Gaps = 5/237 (2%) Query: 26 LQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASGRI 85 L V GL+ Y KV L D ++ + G+I ++G NGAGKSTL+ +++G P G I Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPP---RQGEI 60 Query: 86 LFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGAYKRRRNGESGYLDQQDF 145 L+ G +++ + +A G+S +PE R++F M+V +NL LGA+ + ++ Sbjct: 61 LWNGRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLV--TNSAVVRERLAR 118 Query: 146 VYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEILSI 205 VY +FPRLKER Q AGT+SGGE+ M+++GR LMA+PQ+L++DEPSLGL+PL KE ++ Sbjct: 119 VYEIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNV 178 Query: 206 ISQLRSTGVATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVESYLG 262 I ++ + G+ LLVEQNAR L ++ +GYVL G ++ EG A LA++ + +Y G Sbjct: 179 IRRINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYFG 235 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 181 bits (458), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 104/243 (42%), Positives = 149/243 (61%), Gaps = 5/243 (2%) Query: 21 TAPVLLQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAA 80 +AP LL+V L YG + A ++ + G+ V +IG NGAGKS+ L A+ G + Sbjct: 2 SAP-LLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKP--- 57 Query: 81 ASGRILFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGAY-KRRRNGESGY 139 ASG I G+ V + E V +G++LVPE R +F +VEDNL+LG + + +R+G + Sbjct: 58 ASGSITLGGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAAL 117 Query: 140 LDQQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLIT 199 D D ++ LFPRLKERR Q AG+LSGGE+QML + R LM+ P++L++DE SLGLAP I Sbjct: 118 RDDIDRMFQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKIL 177 Query: 200 KEILSIISQLRSTGVATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVES 259 + ++ L G++ LLVEQ A AL V YV+E G + G + L D ++E+ Sbjct: 178 DFLFPVLVDLNRQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEA 237 Query: 260 YLG 262 YLG Sbjct: 238 YLG 240 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 139 bits (349), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 135/240 (56%), Gaps = 6/240 (2%) Query: 26 LQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLLNAMMGAMPAGAAASGRI 85 L V+GL YG + D AL + +G+++ ++GPNGAGK+T ++G +P+ A GRI Sbjct: 5 LIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDA---GRI 61 Query: 86 LFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGAYKRRRNGESGYLDQ-QD 144 G D+S+ + +R GLS +P++ +F ++VEDN+ +R NG++ +Q + Sbjct: 62 ELDGVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQ 121 Query: 145 FVYTLFPRLK--ERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITKEI 202 + TL L+ + R+ A +LSGGER+ + + RAL P+ ++LDEP G+ P+ EI Sbjct: 122 RLDTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEI 181 Query: 203 LSIISQLRSTGVATLLVEQNARAALQVADHGYVLEMGEMVCEGPAGVLAADRKIVESYLG 262 I+ L+ G+ L+ + N R L + D Y++ G ++ G + AD + YLG Sbjct: 182 QRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYLG 241 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 18/267 (6%) Query: 11 APSQAEVRATTA--PVLLQVTGLSARYGKVAALTDAALSLRAGQIVTVIGPNGAGKSTLL 68 A ++A +++ TA LQ ++ +G + A + L+AG + +VIGPNGAGKST + Sbjct: 331 ADTEALLKSDTAAGTTCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFI 390 Query: 69 NAMMGAMPAGAAASGRILFQGEDVSQMEVEERVARGLSLVPEKRELFTSMAVEDNLLLGA 128 N + G SG I F G+ + + + GL+ + ELF M +N+L+GA Sbjct: 391 NCVSGFY---RPTSGSIEFMGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGA 447 Query: 129 YKRRRNG--------ESGYLDQQDF-----VYTLFPRLKERRKQAAGTLSGGERQMLAVG 175 R R+G S + D++ + + L + ++ A L G ++ L + Sbjct: 448 DSRYRSGLFATLLRLPSYFHDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIA 507 Query: 176 RALMAKPQVLMLDEPSLGLAPLITKEILSIISQLRSTGVATLLVEQNARAALQVADHGYV 235 RAL P++L+LDEP+ GL ++++ +I L S + LLVE + + V+DH V Sbjct: 508 RALAMSPKLLLLDEPAAGLTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTV 567 Query: 236 LEMGEMVCEGPAGVLAADRKIVESYLG 262 L+ G+++ G + ++ ++E+Y G Sbjct: 568 LDYGKVIASGTVAEVRSNPAVIEAYFG 594 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.131 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 445,906 Number of extensions: 16477 Number of successful extensions: 236 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 188 Number of HSP's successfully gapped: 43 Length of query: 278 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 198 Effective length of database: 736,747 Effective search space: 145875906 Effective search space used: 145875906 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)