BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3981.p
         (443 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094676|ref|YP_001099751.1| putative two-component sensor k...    62   6e-11

>gi|134094676|ref|YP_001099751.1| putative two-component sensor
           kinase (partial) [Herminiimonas arsenicoxydans]
          Length = 499

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 178/427 (41%), Gaps = 66/427 (15%)

Query: 46  VGASLALTYGARNALIGMVLSVISYGLINACISRYAMRTGLSVALFSR-ILFGRLGASLA 104
           +G ++AL YG  NA+  ++   +   L    IS YA R G+ + L +R   FG +G++++
Sbjct: 58  IGGAIALNYGFANAVWAILTVAVITFLTGLPISYYAARYGIDMDLLTRGAGFGYMGSTIS 117

Query: 105 TLIFFSTAIYYAVFEGSVIAVALHHLYPSLLYPVAALIVVLYSVPLVFGSVQHWLDKFNG 164
           +LI+ S  I +   E +++AVAL       L+ +  +I  L+ VPLV   +   + +   
Sbjct: 118 SLIYASFTIIFFALEAAILAVALQMWIAWPLW-IWYVICPLFIVPLVARGITL-ISRLQL 175

Query: 165 VLLPFYLLGLLMALVLAVSQYGYQPQ----WLNFGPAVPPADGWWSCFTYYM-GVWVLMM 219
              P +LL L+   V   + +  +P+    +  F  A+  +    S F   M GV   + 
Sbjct: 176 WTQPLWLLLLITPYV---AIFWKKPEAYTEFTQFVGAISKS----SNFDPVMFGVAATVA 228

Query: 220 FTF--------DYARFGKPEDATYHGRFNFGMPFYLVTILLNGAA-----------GIYL 260
           F+         D+ RF   + A    R       +   +++ GA            G +L
Sbjct: 229 FSLVAQIGEQVDFLRFLPEKTAVNRRR-------WWTAVIVAGAGWIVPGGLKMLGGAFL 281

Query: 261 ASSIPQEGALSEVSVVMAILKLMG--------VW----GLLFVWVTQTRINTANYYLATV 308
           A  + Q G  +  ++    + L+G         W     LLFV V+Q +IN  N Y  ++
Sbjct: 282 AYLVFQTGVPAAHAMEPTRMYLLGFSHLFSDPAWVLAITLLFVVVSQVKINLTNAYAGSL 341

Query: 309 NMQAFFGNLLGLRASRLVWAVVVGAVVYGLMLADVFSYLLKALAYQGVFVVAWVGVALAH 368
               FF  L      R+VW V    +   LM   VF+ L   L       VAWVG  +A 
Sbjct: 342 AWSNFFARLTHSHPGRVVWLVFNCLLALLLMNLGVFAALENVLGLYSNVAVAWVGTLVAD 401

Query: 369 ILTASDHGVVADGAP-------GINRVGLGAWFCGVLLGFVLM------EMAGFWQSLSA 415
           ++     G+   G          IN VGLG       +G          E+A F   ++ 
Sbjct: 402 LVINKPLGLSPKGIEFKRAHLYDINPVGLGTMLLAAGVGITAFSGVMGPEVAAFSPFITL 461

Query: 416 PLTFVVS 422
            +TFV+S
Sbjct: 462 GMTFVIS 468


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.140    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 814,652
Number of extensions: 32736
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 358
Effective length of database: 720,272
Effective search space: 257857376
Effective search space used: 257857376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)