BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3978.p
         (462 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095926|ref|YP_001101001.1| acetyl CoA carboxylase, biotin ...   437   e-124
gi|134094395|ref|YP_001099470.1| carbamoyl phosphate synthase, l...    59   4e-10

>gi|134095926|ref|YP_001101001.1| acetyl CoA carboxylase, biotin
           carboxylase subunit [Herminiimonas arsenicoxydans]
          Length = 456

 Score =  437 bits (1124), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/447 (50%), Positives = 306/447 (68%), Gaps = 5/447 (1%)

Query: 7   KLLVANRGEIAVRIIRAAQALGIPTVAACSEADQDSLAARMADEVQIIGPARADRSYLNG 66
           K+L+ANRGEIA+RI RA + +GI TV   SEAD+D+   ++ADE   IGPA +  SYLN 
Sbjct: 4   KILIANRGEIALRIQRACREMGIKTVVVHSEADRDAKYVKLADESVCIGPAPSTLSYLNM 63

Query: 67  EALLHAAKASGANAIHPGYGFLSENADFAEAVTAAGLIFVGPQAETIRRMGDKAEARRTA 126
            A++ AA+ + A AIHPGYGFLSENADFAE V  +G +F+GP++E+IR MGDK  A++T 
Sbjct: 64  PAIISAAEVTDAEAIHPGYGFLSENADFAERVEQSGFVFIGPRSESIRMMGDKVTAKQTM 123

Query: 127 AAAGVPVVPGSPGELEDLPS-ALACAEQIGYPLLIKASAGGGGRGIRIAHDAAELAREFP 185
             AGVP VPGS G L D P   +  A ++GYP++IKA+ GGGGRG+R+ H  A L     
Sbjct: 124 IKAGVPCVPGSDGALPDDPKEIIQTARKVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVT 183

Query: 186 VAQGEAKAAFGSGAVYLERFIGQARHIEVQILGDGQR-AVHLFERECSLQRRRQKVFEEA 244
           + + EA +AFG+  VY+E+++   RH+E+QIL D  + A+ L ER+CS+QRR QKV EEA
Sbjct: 184 MTKTEAGSAFGNPEVYMEKYLENPRHVEIQILADEHKNAIWLGERDCSMQRRHQKVLEEA 243

Query: 245 PSPALTPAQRSALCDSAVRLAEGLRYRGAGTLEYLFDAHSGEFFFIEMNTRIQVEHPVTE 304
           P+P +       + D        + YRGAGT E+L++  +GEF+FIEMNTR+QVEHPVTE
Sbjct: 244 PAPGIPRKTIERIGDRCAEACRKMGYRGAGTFEFLYE--NGEFYFIEMNTRVQVEHPVTE 301

Query: 305 MITGIDLVQAMLRIAGGEPLPWQQSEIQMEGAALEMRINAEDPARNFFPCPGTVAELRWP 364
           MITGID+VQ  +RIA GE L ++Q +I + G A+E RINAEDP + F P PG +     P
Sbjct: 302 MITGIDIVQEQIRIAAGEKLRYRQRDIVLNGHAIECRINAEDPFK-FTPSPGKIVSWHAP 360

Query: 365 QGPGIRVESHLYPGYRVPPYYDSLLAKLVVHGADRAQAIARAQAALAATQLTGMATTLPL 424
            GPGIRV+SH Y GY VPP+YDS++ K++ +GA R QAI R Q AL+   + G++T +PL
Sbjct: 361 GGPGIRVDSHAYAGYYVPPHYDSMVGKVISYGATREQAIKRMQIALSEMVVEGISTNIPL 420

Query: 425 HQWLLADERVRHARFDTGALESWLAER 451
           H+ L+ D R      +   LE  LA +
Sbjct: 421 HRELMVDARFIEGGTNIHYLEQKLANK 447


>gi|134094395|ref|YP_001099470.1| carbamoyl phosphate synthase,
           large subunit [Herminiimonas arsenicoxydans]
          Length = 1076

 Score = 58.9 bits (141), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 96/247 (38%), Gaps = 36/247 (14%)

Query: 100 AAGLIFVGPQAETIRRMGDKAEARRTAAAAGVPVVPGSPGELEDLPSALACAEQIGYPLL 159
           A G+  VG   + I    D+   ++     G+   P      E+   AL  A++IGYPL+
Sbjct: 650 ANGVPIVGTSPDMIDAAEDRERFQKLLNDLGLRQPPNRTARTEE--DALRLAQEIGYPLV 707

Query: 160 IKASAGGGGRGIRIAHDAAELAREFPVAQGEAKAAFGSGAVYLERFIGQARHIEVQILGD 219
           ++ S   GGR + I H+  +L R       EA        V L+RF+  A  ++V  L D
Sbjct: 708 VRPSYVLGGRAMEIVHEQRDLERYMR----EAVKVSHDSPVLLDRFLNDAIEVDVDCLSD 763

Query: 220 GQRA-------------VHLFERECSLQRRRQKVFEEAPSPALTPAQRSALCDSAVRLAE 266
           G+R              VH  +  CSL           P  +L+    + L      +A+
Sbjct: 764 GERTFIGGVMEHIEQAGVHSGDSACSL-----------PPYSLSQETINELKRQTSLMAK 812

Query: 267 GLRYRGAGTLEYLFDAHSGE------FFFIEMNTRIQVEHPVTEMITGIDLVQAMLRIAG 320
           GL   G   +++       +       F +E+N R     P     TG+ L +   R   
Sbjct: 813 GLNVIGLMNVQFAIQQQEIDGKLQDVVFVLEVNPRASRTVPYVSKATGLQLAKIAARCMV 872

Query: 321 GEPLPWQ 327
           G+ L  Q
Sbjct: 873 GQSLDSQ 879


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 786,034
Number of extensions: 29780
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 2
Length of query: 462
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 377
Effective length of database: 720,272
Effective search space: 271542544
Effective search space used: 271542544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)