BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3975.p (305 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 103 1e-23 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 83 2e-17 gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 81 5e-17 gi|134094687|ref|YP_001099762.1| putative DNA-binding transcript... 74 1e-14 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 71 6e-14 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 146/310 (47%), Gaps = 29/310 (9%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 M I LRQ+RYFV AE +AAI LH++Q ++ AIQ LEA+LG LF R+ + + LT Sbjct: 1 MNIELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALT 60 Query: 61 DSGRHFLNHAYSILRSVDDAMKSPLPD------NTASGSLRVAASYTVLGYFLPHHLQRL 114 +G L A IL+ + LPD + ASG L +A T LP L+ Sbjct: 61 PAGSALLPEAQRILQQT-----AALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREF 115 Query: 115 SQSYPGIKLHVHEKERAEIEQSLVEGDIDMAVVLTSNLRHRDIAYETLFGSVRRLWLPAR 174 +SYPG+++ + E L++G ID+ +++ + + L L L A Sbjct: 116 RESYPGVEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAP 175 Query: 175 HRL----GERSVVNLSEVVNEPFILLTVDEAD---KTALRYWNQSGRKPNILMRTSSIEA 227 L G++SV L + P I+ A L + +G P+I ++ Sbjct: 176 KGLKALKGKQSVA-LQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQT 234 Query: 228 VRSMVANGSGVAILSDLVYRPWSLEGLR---IETVLLMDHVPAMNVGLAWRKGVKFTPAM 284 + +V+ G G+A++ P S+ L+ ++ L + P + GLAWR+ +P + Sbjct: 235 IIGLVSAGMGIALV------PQSVSNLKRPGVDYKPLANKTPLVETGLAWRRD-NASPVL 287 Query: 285 EAVREYFRQS 294 +A E R++ Sbjct: 288 KAFLELLRKN 297 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 82.8 bits (203), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 21/301 (6%) Query: 3 ITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILTDS 62 +TL +++Y VA A AA H++Q +++ AI++LE LG LF R + +T Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 63 GRHFLNHAYSIL------RSVDDAMKSPLPDNTASGSLRVAASYTVLGYFLPHHLQRLSQ 116 G + A +L + + K PL G R+ YT+ Y LP ++ + + Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKDPL-----VGPFRLGIIYTIAPYLLPPLVKAMIE 115 Query: 117 SYPGIKLHVHEKERAEIEQSLVEGDIDMAVVLTSNLRHRDIAYETLFGSVRRLWLPARHR 176 P + L + E ++ + L +G+ID A+V + + + + ++ + +P H Sbjct: 116 RVPQMPLVLQENFTVKLLEQLRQGEIDAAIVALP-IPDQGLLVQPVYDEPFVVAVPKHHP 174 Query: 177 LGERSVVNLSEVVNEPFILL--------TVDEADKTALRYWNQSGRKPNILMRTSSIEAV 228 ERS V + +E +LL V E R+ + SG SS+E + Sbjct: 175 WAERSSVTTDNLKSETMLLLGNGHCFRDQVLEVCPEMSRF-STSGDGIARTFEGSSLETI 233 Query: 229 RSMVANGSGVAILSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGVKFTPAMEAVR 288 R MVA+G G+ +L + + + P+ V L WRK A+E VR Sbjct: 234 RHMVASGIGITVLPQASVPDMHTTDGMLRYIPFVQPGPSRRVVLVWRKSFTRGVAIEEVR 293 Query: 289 E 289 + Sbjct: 294 Q 294 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 81.3 bits (199), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 128/269 (47%), Gaps = 12/269 (4%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 M L + F+ + E G I+ A H+S +S ++ I+ +E +LG PL IR +G+ T Sbjct: 1 MRFDLTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEAT 60 Query: 61 DSGRHFLNHAYSILRSVDDAMKSPLPD--NTASGSLRVAASYTVLGYFLPHHLQRLSQSY 118 G+ ++HA LR + M+ L + G +R+ ++ L FLP L ++ Sbjct: 61 PVGKALVHHARIALRQ-QERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATH 119 Query: 119 PGIKLHVHEKERAEIEQSLVEGDIDMAVVLTSNLRHRDIA-YETL-FGSVRRLWLPAR-H 175 P + + + E+ EI +L EG ID+ ++ S D + +ET F R + AR H Sbjct: 120 PNVNIDLEERLSFEIVSALTEGTIDIGILSDSV----DFSGFETFPFHDDRLTLVVARDH 175 Query: 176 RLGERSVVNLSEVVNEPFILLTVDEADKTAL-RYWNQSGRKPNILMRTSSIEAVRSMVAN 234 L RS ++ +E ++ FI L A + L + GR+ +R S +AV M+ Sbjct: 176 PLSVRSSIHFAETLDYDFIGLQEGSALQEYLSEQAAKMGRRFKYRVRLRSFDAVCRMIER 235 Query: 235 GSGVAILSDLVYRPWSLEGLRIETVLLMD 263 G+ ++ + + + I TV ++D Sbjct: 236 NVGIGVVPEAAANRLK-KSMDIHTVSILD 263 >gi|134094687|ref|YP_001099762.1| putative DNA-binding transcriptional regulatory transcription regulator protein [Herminiimonas arsenicoxydans] Length = 305 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 12/255 (4%) Query: 11 FVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILTDSGRHFLNHA 70 FV A G I++ A +++ ++ + I +LEA LG L R G+ LTD+G HA Sbjct: 14 FVDVARTGSITRGAQQANLALAAASKRISDLEAHLGTVLLYRHANGVTLTDAGNACFQHA 73 Query: 71 YSILRSVDDAMKSPLPDNTAS--GSLRVAASYTVLGYFLPHHLQRLSQSYPGIKLHVHEK 128 I++ V + M + D + G +R+ A+ + + FLP L Q++ G+++ + E+ Sbjct: 74 LGIIQDV-ERMSGVMSDYASGIRGQVRIWANTSAITQFLPDDLHAFMQAHAGVRIDIEER 132 Query: 129 ERAEIEQSLVEGDIDMAVVLTSNLRHRDIAYETLFGSVRRLWLPARHRLGERSVVNLSEV 188 ++ + E D+ + IA T L +P H L V+LS+ Sbjct: 133 NSGDVVAGIRENRTDIG-IFADPTPAEGIAVFTYRKQKLGLVVPKNHPLAAHKQVSLSDA 191 Query: 189 VNEPFILLTVDEADKTALRYWNQSGR--KP-NILMRTSSIEAVRSMVANGSGVAI---LS 242 ++ F+ L EA R R KP + + S +AV MV G G+ + L+ Sbjct: 192 LDYDFVSLA--EATSLTERLHAACSRLQKPLKLRAQVRSFDAVCRMVKAGVGIGVVPFLT 249 Query: 243 DLVYRPWSLEGLRIE 257 R L LR++ Sbjct: 250 QAEARSLGLHFLRVD 264 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 71.2 bits (173), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 68/295 (23%), Positives = 130/295 (44%), Gaps = 15/295 (5%) Query: 4 TLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILTDSG 63 TLRQ++ F A + S+AA LH++Q +V++ +++LE G LF + + + LT G Sbjct: 49 TLRQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGG 108 Query: 64 RHFLNHAYSILRSVDDAMKSPLPDNTASGSLRVAASYTVLGYFLPHHLQRLSQSYPGIKL 123 L+++ +I++ +A + +G A + YF P L ++S+ G+ L Sbjct: 109 TELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVISAGDYFFPRLLVEFARSHQGVTL 168 Query: 124 HVHEKERAEIEQSLVEGDIDMAVVLTSNLRHRDIAYETLFGSVRRLWLPARHRLGERSVV 183 ++ R + L D+A+++ D E + H L + + Sbjct: 169 NLSVHNREGLLNQLANNLTDLAIMVRPP-TDMDTINEPFAPHPYVIVAAPDHHLVSKKNI 227 Query: 184 NLSEVVNEPFILLTVDEADKTALRYWNQSGRKP---NILMRTSSIEAVRSMVANGSGVAI 240 +S +++EPF++ ++ T + G + NI M S E ++ V G G++ Sbjct: 228 PMSTLIHEPFVVR--EKGSDTWHSMEDGFGSRIDDLNIAMEIKSTETIKQAVIAGMGISF 285 Query: 241 LS----DLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGVKFTPAMEAVREYF 291 LS + + SL L +E +M +N + RK + P +A R + Sbjct: 286 LSAHTISMELQAGSLTVLDVEGFPVM-----LNWYVVHRKNKRLPPVAQAFRNFL 335 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 541,179 Number of extensions: 21200 Number of successful extensions: 112 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 16 Length of query: 305 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 224 Effective length of database: 733,452 Effective search space: 164293248 Effective search space used: 164293248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)