BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3972.p (267 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding pro... 447 e-127 gi|134096149|ref|YP_001101224.1| toluene tolerance efflux ABC tr... 194 4e-51 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 159 1e-40 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 120 6e-29 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 117 5e-28 >gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 267 Score = 447 bits (1150), Expect = e-127, Method: Compositional matrix adjust. Identities = 220/266 (82%), Positives = 239/266 (89%) Query: 1 LPNIVEIRDLHFRYGDRPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGR 60 +PN+VEIR+LHF YG+RPIL+ L MDFPRGKV+AVMGGSGSGKTT+LRLIGGQL PQ G Sbjct: 1 MPNLVEIRNLHFAYGERPILSELTMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLLPQAGN 60 Query: 61 VEVDGENVPSLATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDDTLIRDL 120 V VDG+ V + TK LY +RRKMGMLFQ+GALFTDM+VFDNVAFPLREHTDL + LI DL Sbjct: 61 VVVDGQVVSEMDTKALYRMRRKMGMLFQHGALFTDMSVFDNVAFPLREHTDLPEQLIHDL 120 Query: 121 VLMKLNAVGLRNAAALKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTA 180 VLMKL AVGLRNAA LKPAEISGGMARRVALARAIALDP LIMYDEPFAGLDPISMG+TA Sbjct: 121 VLMKLQAVGLRNAAQLKPAEISGGMARRVALARAIALDPQLIMYDEPFAGLDPISMGMTA 180 Query: 181 NLIRRLNDALGSTSILVSHDVNESFAIADYVYFLSAGKIVAQGTPQEMRESTDPYVKQFV 240 NLIR+LNDALGST+ILVSHDV+ESF IADYVYFLS GK+VAQGTP EM STDPYVKQFV Sbjct: 181 NLIRKLNDALGSTTILVSHDVHESFLIADYVYFLSNGKVVAQGTPAEMMASTDPYVKQFV 240 Query: 241 HAQADGPVPFHYPGKSLAEDLGLGGG 266 HA+ DGPVPFHYPGKSLA DLGLG G Sbjct: 241 HAEPDGPVPFHYPGKSLAADLGLGEG 266 >gi|134096149|ref|YP_001101224.1| toluene tolerance efflux ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 280 Score = 194 bits (493), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 104/241 (43%), Positives = 156/241 (64%), Gaps = 1/241 (0%) Query: 4 IVEIRDLHFRYGDRPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGRVEV 63 I+EI +L ++GD + L++ +G++V+++GGSGSGKT +LR + G P +G V V Sbjct: 23 IIEIENLCTQFGDVIVHENLNLTINQGEIVSLVGGSGSGKTVLLRQMLGLNHPTRGTVRV 82 Query: 64 DGENVPSLATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDDTLIRDLVLM 123 GE++ + +QL LR + GMLFQ+GALF+ TVFDNVA P+RE L LIRD L+ Sbjct: 83 FGEDINRITPQQLQQLRNRWGMLFQHGALFSSFTVFDNVAQPMRELRVLPKQLIRDAALL 142 Query: 124 KLNAVGLRNAAALK-PAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTANL 182 KL G+ ALK P+++SGGM +RVALARA+AL+P L+ DEP AGLDP + +L Sbjct: 143 KLQMAGIGPEHALKMPSDLSGGMIKRVALARALALEPELLFLDEPTAGLDPNASESFVDL 202 Query: 183 IRRLNDALGSTSILVSHDVNESFAIADYVYFLSAGKIVAQGTPQEMRESTDPYVKQFVHA 242 IR L D + T ++V+HD++ FA++ V L+ +I+A P ++ E P+++ F Sbjct: 203 IRTLRDEMQLTVVMVTHDLDTLFALSSRVAVLADKRIIAYCEPGKVVEFKHPFIETFFRG 262 Query: 243 Q 243 + Sbjct: 263 E 263 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 159 bits (402), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 146/240 (60%), Gaps = 9/240 (3%) Query: 5 VEIRDLHFRYGDRPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGRVEVD 64 +E+++++ ++G+ L + ++FP G++ A++G SG GKTT+LR+I G QP G+V +D Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 65 GENVPSLATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLREH---TDLDDTLIRDLV 121 GE+ + ++ R++G +FQ+ ALF MTVF+N+AF LR T +++I++ V Sbjct: 63 GEDASARHVRE-----RQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKV 117 Query: 122 LMKLNAVGLRNAAALKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTAN 181 L V L A P ++SGG +R+ALARA+A++P +++ DEPF LD Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 182 LIRRLNDALGSTSILVSHDVNESFAIADYVYFLSAGKIVAQGTPQEMRES-TDPYVKQFV 240 +RRL+D L TSI V+HD E+ +AD + ++ G + G P+++ + P+V F+ Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFL 237 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 120 bits (301), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 122/217 (56%), Gaps = 8/217 (3%) Query: 4 IVEIRDLHFRYGDRPILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGRVEV 63 ++EIR+L R+GD ++ + + G+ ++G SG GKTT+LR+I G +P G++ + Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 64 DGENVPSLATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDDTLIRDLVLM 123 DG ++ + +Q R + +FQN ALF MTV N+AFPL E + + I+ V Sbjct: 63 DGVDLTGVPPEQ-----RVVRTVFQNYALFPHMTVAGNIAFPL-EMANTPKSEIKQKVDE 116 Query: 124 KLNAVGLRNAAALKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDP-ISMGVTANL 182 L V L AA P E+SGG +RV++ARA+ P L++ DEP + LD + + L Sbjct: 117 ALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIEL 176 Query: 183 IRRLNDALGSTSILVSHDVNESFAIADYVYFLSAGKI 219 I L +G T + V+HD E+ A++ + ++ G I Sbjct: 177 I-NLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNI 212 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 117 bits (294), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 122/214 (57%), Gaps = 12/214 (5%) Query: 12 FRYGDR--PILTGLHMDFPRGKVVAVMGGSGSGKTTILRLIGGQLQPQQGRVEVDGENVP 69 +R G + I+ L RG++ ++G SG GKTT+LR I G +G + + G+ + Sbjct: 24 YRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEIS 83 Query: 70 S---LATKQLYLLRRKMGMLFQNGALFTDMTVFDNVAFPLREHTDLDDTLIRDLVLMKLN 126 + AT + R++G++FQ+ ALF ++V DNV F LR+ L + + L Sbjct: 84 NAHFTATPE----TRQIGVVFQDYALFPHLSVADNVGFGLRK---LAAPERQARIAALLT 136 Query: 127 AVGLRNAAALKPAEISGGMARRVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRL 186 VGL + P E+SGG +RVALARA+A P L++ DEPF+ LD A+ +R + Sbjct: 137 LVGLASQGKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDI 196 Query: 187 NDALGSTSILVSHDVNESFAIADYVYFLSAGKIV 220 +G+T++LV+HD +E+FAIAD + + G IV Sbjct: 197 LKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIV 230 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 521,418 Number of extensions: 21448 Number of successful extensions: 231 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 48 Length of query: 267 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 187 Effective length of database: 736,747 Effective search space: 137771689 Effective search space used: 137771689 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)