BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3971.p
         (259 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096234|ref|YP_001101309.1| ABC transporter membrane protei...   414   e-117
gi|134096148|ref|YP_001101223.1| putative transmembrane protein ...    96   2e-21

>gi|134096234|ref|YP_001101309.1| ABC transporter membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 259

 Score =  414 bits (1064), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/259 (83%), Positives = 240/259 (92%)

Query: 1   MIVNAVSALGRSVREFAVGVGFAARMFINMLGASLGLLRRPRLITDQIHFIGNYSLVIIT 60
           MI   ++A+GR VREF   +GFA R+F  ++G S GLLRRP+L+  QIHFIGNYSLV+I 
Sbjct: 1   MIAAVLTAIGRGVREFVTNLGFATRIFFKIIGVSGGLLRRPQLVISQIHFIGNYSLVLIA 60

Query: 61  VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI 120
           VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI
Sbjct: 61  VSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEI 120

Query: 121 GLMKAGEQLSAMEMMAVNPLQRVVAPRFWAGVISMPVLAAIFSAVGVMGGYVVGVLLIGV 180
           GLMKAGEQLSAMEMMAVNPLQRV+APRFWAGV++MPVLAAIFSA+G++GGY+VGV +IGV
Sbjct: 121 GLMKAGEQLSAMEMMAVNPLQRVLAPRFWAGVVAMPVLAAIFSAIGIIGGYIVGVKMIGV 180

Query: 181 DDGAFWSQMQGGVDVWNDVANGVLKSVVFGVAVTFVALFQGYEAQPTPEGVARATTRTVV 240
           D+GAFWSQMQGGVDVW+DV NGV+KSVVFG AVTFVAL+QGY+AQPTPEGVARATTRTVV
Sbjct: 181 DEGAFWSQMQGGVDVWDDVLNGVIKSVVFGFAVTFVALYQGYQAQPTPEGVARATTRTVV 240

Query: 241 IASLTVLGLDFLLTALMFS 259
           IASL+VL LDFLLTALMFS
Sbjct: 241 IASLSVLWLDFLLTALMFS 259


>gi|134096148|ref|YP_001101223.1| putative transmembrane protein
           [Herminiimonas arsenicoxydans]
          Length = 374

 Score = 95.9 bits (237), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 121/218 (55%), Gaps = 2/218 (0%)

Query: 42  RLITDQIHFIGNYSLVIITVSGLFVGFVLGLQGYYTLNKYGSEQALGLLVALSLTRELGP 101
           + I+  I   G  +L I  + G  +G VL       L+++G +  L  ++ +S+ RELGP
Sbjct: 155 KEISANIFHAGYQALGITALVGFLIGVVLSYLSAQQLHQFGGDVFLVNILGMSVIRELGP 214

Query: 102 VVTALLFAGRAGTSLTAEIGLMKAGEQLSAMEMMAVNPLQRVVAPRFWAGVISMPVLAAI 161
           ++ A+L AGR+G+S+TA++G+M+  E+L AM +M +    R+V P+  A  I+MP+L   
Sbjct: 215 LLAAILVAGRSGSSITAQLGVMRVTEELDAMLVMGLPHGYRLVMPKVIALAIAMPLLVVW 274

Query: 162 FSAVGVMGGYVVGVLLIGVDDGAFWSQMQGGVDVWNDVANGVLKSVVFGVAVTFVALFQG 221
             A+ ++GG     L +G+    F  ++   V + N    G+ K VVFG  +  VA   G
Sbjct: 275 TDAMALIGGMAAANLELGLSYKYFIRELPDAVPLAN-YWIGLGKGVVFGALIALVACHFG 333

Query: 222 YEAQPTPEGVARATTRTVVIASLTVLGLDFLLTALMFS 259
              +P  E +   TT +VV +++T++ L   L A++FS
Sbjct: 334 LRIKPNTESLGAGTTISVV-SAITIVILADALFAIIFS 370


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.140    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 400,122
Number of extensions: 13467
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 179
Effective length of database: 736,747
Effective search space: 131877713
Effective search space used: 131877713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)