BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3969.p
         (249 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096232|ref|YP_001101307.1| lipoprotein [Herminiimonas arse...   302   8e-84

>gi|134096232|ref|YP_001101307.1| lipoprotein [Herminiimonas
           arsenicoxydans]
          Length = 281

 Score =  302 bits (774), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 142/231 (61%), Positives = 174/231 (75%), Gaps = 1/231 (0%)

Query: 20  FALAAAALSGCASTSNNPNDPLEGFNRTMFSFNDTVDKVALKPAAQAYDTVVPTPVQHGV 79
           F ++A  L GCA++SNN NDP EGFNRTMF FNDTVD+VALKPAA AY  V+P+  Q  V
Sbjct: 9   FLVSALLLGGCATSSNNANDPFEGFNRTMFEFNDTVDRVALKPAATAYQEVLPSFAQTAV 68

Query: 80  GNFFGNIGDVWSSINQLLQGRIEQGVSTFMRVAINTTFGLGGVLDVATEARLPREKSDFG 139
           GNFFGN+GD+W+ +N  LQG +E G+S  MRVA N+T G GG+LD+A+EA + + K DFG
Sbjct: 69  GNFFGNLGDIWTMVNNFLQGNVENGLSDGMRVAFNSTIGFGGLLDIASEAGITKHKEDFG 128

Query: 140 QTLGKWGVGSGPYVVLPFFGPSTVRDTAGMPVDLYGDLWTYKRPARWRNVGAVVRIVDRR 199
           QTLG WGV SGPYVVLPFFGPST+RDT  +PVD+YGD+WTY  P   RNVG +VR VD R
Sbjct: 129 QTLGVWGVESGPYVVLPFFGPSTMRDTVALPVDIYGDVWTYSTPVDRRNVGILVRTVDLR 188

Query: 200 AQLLDASTLLEDAALDKYDFVRDAYLQRRQSQIN-GASSSGGEQKEETIKP 249
           A  L A+ LLEDAALD+Y FVR AYLQRR+S I+ G   +   Q ++ + P
Sbjct: 189 ASALSATNLLEDAALDRYTFVRGAYLQRRESLIHKGEEPATKPQSDKIVDP 239


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 446,891
Number of extensions: 18902
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 170
Effective length of database: 740,042
Effective search space: 125807140
Effective search space used: 125807140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)