BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3968.p
         (213 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096231|ref|YP_001101306.1| putative toluene tolerance prot...   280   5e-77

>gi|134096231|ref|YP_001101306.1| putative toluene tolerance protein
           [Herminiimonas arsenicoxydans]
          Length = 211

 Score =  280 bits (715), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 133/206 (64%), Positives = 169/206 (82%), Gaps = 5/206 (2%)

Query: 1   MKMLTKLFAIAAFAIPALSFSGVAAAQEAPDALVKRISSEVLDTAKNDKDIQAGDNSRIM 60
           M +L KL    + A+ A++F+  AA QEAPD L+KRIS EV+  AK DKDIQ+G+  RI 
Sbjct: 1   MNILKKL----SLALVAMTFAAHAAVQEAPDVLIKRISEEVMSIAKTDKDIQSGNPQRIQ 56

Query: 61  QLVEQKILPYVDFERMTQLAAGRYWRQATPDQQKQLITQFRSLLVFTYSGALSQVRDQKI 120
           Q+V++KILP VDF+RMT LAAGR+WR+ATP+QQKQL T+FRSLL++TYSGA+SQ+RDQK+
Sbjct: 57  QIVDEKILPNVDFQRMTALAAGRHWREATPEQQKQLTTEFRSLLMYTYSGAISQIRDQKL 116

Query: 121 VFKPLRAAPGDTEVEVNSQVISDRGGEPIQLSYRLEKKGDGWKLYDVNVLGAWLVEAYRG 180
            ++PLRA P DTEV VN+QVI  R GEP+QLSYRL K   GWK+YDVNVLGAWLVE Y+G
Sbjct: 117 EYRPLRADPTDTEVIVNTQVIQPR-GEPLQLSYRLAKSPAGWKIYDVNVLGAWLVETYKG 175

Query: 181 TFASEINKGGIDGLIKALTDKNQQLA 206
           +FA+EI+K GI+GLIK L +KN++LA
Sbjct: 176 SFAAEISKSGIEGLIKTLVEKNKKLA 201


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 357,343
Number of extensions: 13593
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 135
Effective length of database: 743,337
Effective search space: 100350495
Effective search space used: 100350495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)