BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3967.p
         (97 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096230|ref|YP_001101305.1| hypothetical protein HEAR3075 [...    93   3e-21

>gi|134096230|ref|YP_001101305.1| hypothetical protein HEAR3075
          [Herminiimonas arsenicoxydans]
          Length = 95

 Score = 92.8 bits (229), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 54/83 (65%)

Query: 1  MFKPGTSLTFTNASAVLREGLSAIAAGQASIDVSGVSVVDSSAVATLLAWRRAAAGRGAA 60
          MF+PG SLTF NA   L  GL AIA GQ  ID SG+  VDS+AVAT+LAWRR A  R   
Sbjct: 1  MFQPGASLTFDNAKTTLNAGLQAIAEGQNEIDFSGLITVDSAAVATMLAWRRLAVARAVP 60

Query: 61 LDFGILPANLQSLADLYGVTALL 83
          L F  +P NL SL  LY V AL+
Sbjct: 61 LVFHHVPENLHSLISLYDVAALV 83


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.127    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 109,790
Number of extensions: 1826
Number of successful extensions: 14
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 97
Length of database: 1,000,347
Length adjustment: 65
Effective length of query: 32
Effective length of database: 786,172
Effective search space: 25157504
Effective search space used: 25157504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 121 (51.2 bits)