BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3966.p (303 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096229|ref|YP_001101304.1| ABC transporter ATP-binding pro... 496 e-142 gi|134094659|ref|YP_001099734.1| ABC transporter ATP-binding pro... 232 2e-62 gi|134095536|ref|YP_001100611.1| drug ABC transporter ATP-bindin... 134 7e-33 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 123 1e-29 gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her... 119 2e-28 >gi|134096229|ref|YP_001101304.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 303 Score = 496 bits (1277), Expect = e-142, Method: Compositional matrix adjust. Identities = 237/303 (78%), Positives = 268/303 (88%) Query: 1 MAALQITDIKKRYQSLQALGGVSLAVEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSV 60 MAA+QI ++K Y++L+AL GVSLA+EEGEFFGLLGPNGAGKTTLISI+AGLNRAD+GS+ Sbjct: 1 MAAIQINQVEKSYRALKALNGVSLAIEEGEFFGLLGPNGAGKTTLISILAGLNRADAGSI 60 Query: 61 TLHGHDVVSDYRAARMKLGVVPQELVFDPFFTVRETLRMQSGYFGLSSNDKWIDEVMENL 120 +HG+DVV+DYR R LGVVPQELVFDPFFTVRETLRMQSGY+GL +ND WIDEVM +L Sbjct: 61 KVHGYDVVTDYRQTRKLLGVVPQELVFDPFFTVRETLRMQSGYYGLKNNDAWIDEVMHHL 120 Query: 121 DLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWHFIGRLNR 180 DLT KAD NMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLW FI RLNR Sbjct: 121 DLTGKADANMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKFISRLNR 180 Query: 181 EGHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTEGLIRRISGSQMVLRLKRGSLPDG 240 EGHT+VLTTHYLEEAQALCNR+AMLK G+VVALD+T LI+RI+GSQMVLR+ G+ PD Sbjct: 181 EGHTVVLTTHYLEEAQALCNRVAMLKAGQVVALDATSTLIKRIAGSQMVLRIASGTFPDE 240 Query: 241 LKALVTHPEELLAGNKFTLRVTDYKEVEPILATLRTSGVEIDDLQLQQADLEDVFIQIMG 300 LK L+ HPEE GN++TLRV +Y +VEPILA LR SGV I+D+QLQQADLEDVFIQIM Sbjct: 241 LKNLLLHPEEPAFGNQYTLRVNEYSDVEPILAKLRLSGVVIEDMQLQQADLEDVFIQIME 300 Query: 301 DEK 303 EK Sbjct: 301 GEK 303 >gi|134094659|ref|YP_001099734.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 306 Score = 232 bits (592), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 127/303 (41%), Positives = 189/303 (62%), Gaps = 10/303 (3%) Query: 4 LQITDIKKRYQS-LQALGGVSLAVEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSVTL 62 + + + K+Y S QAL ++L + GE F LLGPNGAGKTTLI+II G+ +G+V Sbjct: 5 ISVRQLTKQYASGFQALKEINLDIRRGEIFALLGPNGAGKTTLINIICGIVNPSTGTVLA 64 Query: 63 HGHDVVSDYRAARMKLGVVPQELVFDPFFTVRETLRMQSGYFGLSSNDKWIDEVMENLDL 122 GHD+V DYRAAR K+G+VPQEL D F TV T+ G FG N I++V+ +L L Sbjct: 65 DGHDIVRDYRAARSKIGLVPQELSTDAFETVWATVNFSRGIFGKPRNHAHIEKVLRSLFL 124 Query: 123 TNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWHFIGRLNREG 182 +K D + +LSGGMKRRV++A+AL H+P ++ LDEPTAGVDVELR+ +W + L G Sbjct: 125 WDKKDAKIFSLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRRDMWEMVRGLRASG 184 Query: 183 HTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTEGLIRRISGS--QMVLRLKRGSLPDG 240 TI+LTTHY+EEA+ + +RI +++ G+++ ++ L+ ++ + L+ ++PDG Sbjct: 185 VTIILTTHYIEEAEEMADRIGVIRKGEIILVEDKSALMTKLGKKQLHLQLQQTLQAIPDG 244 Query: 241 LKALVTHPEELLA-GNKFTLRVTDYKE---VEPILATLRTSGVEIDDLQLQQADLEDVFI 296 L++ EL A GN+ T E + +L L G+ DLQ Q+ LED+F+ Sbjct: 245 ---LISQQLELSADGNELTYTFDAQSEQTGIAELLKKLDEHGIGFKDLQSSQSSLEDIFV 301 Query: 297 QIM 299 ++ Sbjct: 302 NLV 304 >gi|134095536|ref|YP_001100611.1| drug ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 134 bits (336), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 115/195 (58%), Gaps = 3/195 (1%) Query: 24 LAVEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSVTLHGHDVVSDYRAARMKLGVVPQ 83 +++ GE FGLLG NGAGKTT+I ++A L SG + G DVV + R +G VPQ Sbjct: 1 MSIPPGEVFGLLGRNGAGKTTVIKMLATLLEPSSGHAKVGGFDVVQNAARVRRIIGYVPQ 60 Query: 84 ELVFDPFFTVRETLRMQSGYFGLSSNDK--WIDEVMENLDLTNKADTNMRALSGGMKRRV 141 L D T E L + + + + ++ I + + + L+ + ++ SGGM RR+ Sbjct: 61 ALSADGDLTGYENLSIFAKLYDIPRAERKVRIRDALAFMSLSAVSRNLVKTYSGGMIRRL 120 Query: 142 LVAQALVHKPPVIVLDEPTAGVDVELRQTLWHFIGRLNRE-GHTIVLTTHYLEEAQALCN 200 +AQ+ +H P V+ LDEPT G+D R ++W + +L + G I LTTHYLEEA+ LCN Sbjct: 121 EIAQSTLHHPRVLFLDEPTVGLDPVARISVWEQLEKLQAQFGSAIFLTTHYLEEAERLCN 180 Query: 201 RIAMLKFGKVVALDS 215 R+A++ GK+ A+ + Sbjct: 181 RVAIMNRGKITAIGT 195 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 123 bits (308), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 123/220 (55%), Gaps = 10/220 (4%) Query: 1 MAALQITDIKKRYQSLQALGGVSLAVEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSV 60 MA L+I ++ +R+ + +SL++E GEFF LLGP+G GKTTL+ +IAG + D+G + Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKI 60 Query: 61 TLHGHD---VVSDYRAARMKLGVVPQELVFDPFFTVRETLR--MQSGYFGLSSNDKWIDE 115 L G D V + R R V Q P TV + ++ S + +DE Sbjct: 61 LLDGVDLTGVPPEQRVVR----TVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDE 116 Query: 116 VMENLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWHFI 175 +E++ LT A LSGG ++RV +A+ALV +P +++LDEP + +D +LR+ + + Sbjct: 117 ALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIEL 176 Query: 176 GRLNRE-GHTIVLTTHYLEEAQALCNRIAMLKFGKVVALD 214 L +E G T V TH EA AL +RIA++ G + LD Sbjct: 177 INLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLD 216 >gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Herminiimonas arsenicoxydans] Length = 931 Score = 119 bits (297), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 3 ALQITDIKKRYQSLQALGGVSLAVEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSVTL 62 A++ D+ R+ A+ V+ + GE FG +G NG GKTT + ++ GL A G L Sbjct: 273 AIEARDLTMRFGDFTAVDHVNFRIRRGEIFGFIGSNGCGKTTTMKVLTGLLAASEGRAWL 332 Query: 63 HGHDVVSDYRAARMKLGVVPQELVFDPFFTVRETLRMQSGYFGLSSND--KWIDEVMENL 120 GH+V A R ++G + Q +V + L + + F + + +++ Sbjct: 333 FGHEVDPHDIATRRRVGYMSQSFSLYSELSVMQNLVLHARLFNVPEAEVAARAQQMLTRF 392 Query: 121 DLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWHFIGRLNR 180 L + D L GM++R+ +A A+VH P +++LDEPT+GVD R W + L+R Sbjct: 393 GLEEEIDALPNKLPLGMRQRLSLAVAMVHGPELLILDEPTSGVDPVARDNFWRLLIELSR 452 Query: 181 EGH-TIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTEGLI 220 TI ++TH++ EA+ C+RI+++ GKV+ D+ L+ Sbjct: 453 RDRVTIFISTHFMNEAER-CDRISLMHAGKVLVSDTPAQLV 492 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 9/228 (3%) Query: 1 MAALQITDIKKRYQSLQALGGVSLAVEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGSV 60 + +++ DI RY AL +SL + GL+GP+G GK++L+++ AG + GS Sbjct: 6 LPVIRLADIGLRYGKTVALADISLDIPAQCMVGLIGPDGVGKSSLLALAAGARKMQQGSA 65 Query: 61 TLHGHDVVSDYR--AARMKLGVVPQELVFD--PFFTVRETLRMQSGYFGLSSNDKW--ID 114 + G D+ A ++ +PQ L + P +V E L+ + FG + ++ ID Sbjct: 66 DVLGGDMRRKRHRDAVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDAAERRRRID 125 Query: 115 EVMENLDLTNKADTNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWHF 174 + + L + LSGGMK+++ + AL+H P +++LDEPT GVD R W Sbjct: 126 SLTRSTGLFPFLTRPVGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWSL 185 Query: 175 IG--RLNREGHTIVLTTHYLEEAQALCNRIAMLKFGKVVALDSTEGLI 220 I R R ++++ T Y++EAQ +AM G+V+A + + L+ Sbjct: 186 IAGIRQQRPQISVIVATAYMDEAQGFDWLVAM-DGGRVLATGAPQELL 232 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 550,479 Number of extensions: 22340 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 49 Length of query: 303 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 222 Effective length of database: 733,452 Effective search space: 162826344 Effective search space used: 162826344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)