BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3965.p
         (254 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096228|ref|YP_001101303.1| ABC transporter membrane protei...   402   e-114
gi|134094658|ref|YP_001099733.1| ABC transporter membrane protei...   168   2e-43
gi|134095535|ref|YP_001100610.1| drug ABC transporter membrane p...    72   3e-14

>gi|134096228|ref|YP_001101303.1| ABC transporter membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 251

 Score =  402 bits (1034), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/250 (78%), Positives = 220/250 (88%)

Query: 1   MIGFRTLFYKEILRFWKVATQTITAPVVTALLYLLIFGHVLQDRVQVYPGVNYTGFLVPG 60
           M GF+TL YKE+LRFWKVATQT+ AP++TA+LYLLIFGHVL++ VQVYPGVNYT FLVPG
Sbjct: 1   MSGFQTLLYKEVLRFWKVATQTVAAPILTAVLYLLIFGHVLKNHVQVYPGVNYTTFLVPG 60

Query: 61  LVMMSVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLVVGAGVF 120
           LVMMSVLQNAFAN+SSSLIQSKITGNLVFVLLTPLSHWE FG YVLAA+VRGL VG GVF
Sbjct: 61  LVMMSVLQNAFANASSSLIQSKITGNLVFVLLTPLSHWEFFGAYVLAAMVRGLAVGCGVF 120

Query: 121 VVTVWFGHIDFVAPLWILVFALLGAGILGSLGLIAGIWAEKFDQLAAFQNFLIVPLTFLA 180
           +VT WF  + FVAP WI +F +LGA +LG+LGLIAG+WAEKFDQLAAFQNF+IVP TFL+
Sbjct: 121 LVTAWFADMSFVAPWWIAIFVILGAALLGTLGLIAGMWAEKFDQLAAFQNFVIVPATFLS 180

Query: 181 GVFYSIHSLPPFWQAVSHFNPFFYMIDGFRYGFFGQSDIAPMTSLGIVVVFFLALSTLAV 240
           GVFYSIHSLPP WQ VSHFNPFFYMIDGFRYGFFGQSD+ P+TS   V  F L LS  AV
Sbjct: 181 GVFYSIHSLPPVWQTVSHFNPFFYMIDGFRYGFFGQSDVNPLTSCLAVAGFLLLLSGFAV 240

Query: 241 HMLKSGYKLR 250
           ++LKSGYKLR
Sbjct: 241 YLLKSGYKLR 250


>gi|134094658|ref|YP_001099733.1| ABC transporter membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 253

 Score =  168 bits (426), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/247 (36%), Positives = 142/247 (57%), Gaps = 2/247 (0%)

Query: 5   RTLFYKEILRFWKVATQTITAPVVTALLYLLIFGHVLQDRVQVYPGVNYTGFLVPGLVMM 64
           R +++ E+ R W+   Q+I APV++  LY ++FG  +  R+    GV+Y  F+VPGL+MM
Sbjct: 7   RAIYHFELARTWRTLMQSIAAPVISTSLYFVVFGAAIGARMVEVNGVSYGAFIVPGLIMM 66

Query: 65  SVLQNAFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLVVGAGVFVVTV 124
           +++  + +N+S  +   K  G +  VL  P+S+ E+  GYV AA  + +++G  +     
Sbjct: 67  ALMTESISNASFGIFMPKYAGTIYEVLSAPVSYVEIVIGYVGAAATKSIILGVLILATAR 126

Query: 125 WFGHIDFVAPLWILVFALLGAGILGSLGLIAGIWAEKFDQLAAFQNFLIVPLTFLAGVFY 184
            F   D   P+ ++ F +L A      G I GIWA  F++L      ++ PL FL G FY
Sbjct: 127 LFVSFDIAHPVLMVAFLILTAVTFSLFGFIIGIWATGFEKLQIIPMLIVTPLAFLGGSFY 186

Query: 185 SIHSLPPFWQAVSHFNPFFYMIDGFRYGFFGQSDIAPMTSLGIVVVFFLALSTLAV-HML 243
           SI  LPP WQ ++  NP  Y+I GFR+ F+G SD+    S G+ +V FLAL   AV  + 
Sbjct: 187 SISMLPPVWQKIALINPVVYLISGFRWSFYGTSDVNVAISAGMTLV-FLALCMTAVWWIF 245

Query: 244 KSGYKLR 250
           K+GY+L+
Sbjct: 246 KTGYRLK 252


>gi|134095535|ref|YP_001100610.1| drug ABC transporter membrane
           protein [Herminiimonas arsenicoxydans]
          Length = 285

 Score = 72.0 bits (175), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 100/230 (43%), Gaps = 9/230 (3%)

Query: 11  EILRFWKVATQTITAPVVTALLYLLIFGHVLQD-RVQVYPGVNYTGFLVPGLVMMSVLQN 69
           EI +     T+ +T  V  AL +LLIFG V+    V    G  Y  FL+PG++  SVL  
Sbjct: 42  EIRKLLHDPTELLTRAVQPAL-WLLIFGQVMSHAHVIDTAGFPYLDFLMPGILAQSVLFI 100

Query: 70  AFANSSSSLIQSKITGNLVFVLLTPLSHWEMFGGYVLAAVVRGLVVGAGVFVVTVWFG-- 127
           A  N  S +I  +  G +   L +P     +  G  L    R L+    V ++    G  
Sbjct: 101 AIFNGIS-IIWERDLGIIHKFLASPTPRSCLVLGKALGGGARALIQVVVVLILAAILGVK 159

Query: 128 -HIDFVAPLWILVFALLGAGILGSLGLIAGIWAEKFDQLAAFQNFLIVPLTFLAGVFYSI 186
             +D ++   +++  LL AG+  S  LI     +  ++       L +PL F +   Y  
Sbjct: 160 MKLDIISLGGLVMCVLLSAGLFSSFSLIVACLVKTRERFMGVGQLLTMPLFFASNAIYPT 219

Query: 187 HSLPPFWQAVSHFNPFFYMIDGFRYGFFGQSDIAPMTSLGIVVVFFLALS 236
             +PP  Q +SH NP  Y +D  R        + P   LG+   +FL LS
Sbjct: 220 SMMPPSLQIISHINPLTYQVDALRVLLLPGYSLTPHIGLGL---YFLVLS 266


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.332    0.145    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 396,596
Number of extensions: 13794
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 3
Length of query: 254
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 174
Effective length of database: 736,747
Effective search space: 128193978
Effective search space used: 128193978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)