BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3962.p
         (216 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096225|ref|YP_001101300.1| ATP phosphoribosyltransferase c...   390   e-110

>gi|134096225|ref|YP_001101300.1| ATP phosphoribosyltransferase
           catalytic subunit [Herminiimonas arsenicoxydans]
          Length = 225

 Score =  390 bits (1001), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/212 (89%), Positives = 206/212 (97%)

Query: 3   QQLTLALSKGRIFEETLPLLQAAGITVAEDPESSRKLILPTNDPNVRVIIVRASDVPTYV 62
           QQLTLALSKGRIFEETLPLL+AAGI V EDPE+SRKLIL T+D NVRVIIVRASDVPTYV
Sbjct: 11  QQLTLALSKGRIFEETLPLLEAAGIKVTEDPETSRKLILQTSDANVRVIIVRASDVPTYV 70

Query: 63  QYGAADFGVAGKDVLMEHGGEGLYQPIDLNIAKCRLSVAVQEGFDYANAVRQGARLRVVT 122
           QYGAADFGVAGKDVL+EHGGEGLYQPIDL+IAKCR+SVAV++GFDYA+AV+QGARLRVVT
Sbjct: 71  QYGAADFGVAGKDVLLEHGGEGLYQPIDLHIAKCRMSVAVKDGFDYASAVQQGARLRVVT 130

Query: 123 KYVNTAREHFASKGVHVDLIKLYGSMELGPLVGLSDAIVDLVSTGGTLRANKLVEVEHII 182
           KYV TAREHFA+KGVHVDLIKLYGSMELGPLVGL+DAIVDLVSTG TLRAN+LVEVEHI+
Sbjct: 131 KYVQTAREHFAAKGVHVDLIKLYGSMELGPLVGLADAIVDLVSTGSTLRANQLVEVEHIM 190

Query: 183 DISSRLVVNQAALKLKRERLQPILDAFEKASK 214
           +ISSRLVVN+AALKLKRERLQPIL+AFEKASK
Sbjct: 191 EISSRLVVNKAALKLKRERLQPILEAFEKASK 222


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 385,009
Number of extensions: 15389
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 138
Effective length of database: 743,337
Effective search space: 102580506
Effective search space used: 102580506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)