BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3961.p
         (438 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096224|ref|YP_001101299.1| histidinol dehydrogenase [Hermi...   729   0.0  

>gi|134096224|ref|YP_001101299.1| histidinol dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 438

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/438 (81%), Positives = 386/438 (88%)

Query: 1   MSIAIRKLDSAEAGFRDKLSAVLAFEASEDEAIDRAAATILADVKARGDAAVLEYTQRFD 60
           MSI IRK DS    F+ +L+ VLAFEASEDEAIDRA   IL DVK RGD AVLEYT++FD
Sbjct: 1   MSIQIRKFDSTHPDFKQQLADVLAFEASEDEAIDRAVLRILEDVKKRGDVAVLEYTKQFD 60

Query: 61  RLQAASVAGLEIGKEALQAALAGLPEARRHALQTAADRVRAYHERQKKECGSDGFLYREA 120
            + A S+  LEI  + LQAALA L   RR ALQTAADRVR YHERQK E GS GF Y E 
Sbjct: 61  HVSADSLQALEIKSDDLQAALAQLSPVRRAALQTAADRVRVYHERQKAEIGSHGFSYTET 120

Query: 121 DGTELGQKVTPLDRVGIYVPGGKAAYPSSVLMNAIPAKVAGVQEVIMVVPTPDGVKNELV 180
           DGT LGQKVTPLDRVGIYVPGGKAAYPSSVLMNAIPAKVAGVQEVIMVVPTP+GV+NELV
Sbjct: 121 DGTILGQKVTPLDRVGIYVPGGKAAYPSSVLMNAIPAKVAGVQEVIMVVPTPNGVQNELV 180

Query: 181 LAAAAIAGVDRVFTIGGAQAVGALAYGTTTIPQVDKIVGPGNAYVAAAKRRVFGVVGIDM 240
           LAAAA++GVDRVFTIGGAQAV ALAYGT TIPQVDKIVGPGNAYVAAAKRRVFG VGIDM
Sbjct: 181 LAAAAMSGVDRVFTIGGAQAVAALAYGTATIPQVDKIVGPGNAYVAAAKRRVFGTVGIDM 240

Query: 241 IAGPSEILVICDGATDPDWIAMDLFSQAEHDELAQSILLCPDADYIAQVEASINRLLEDM 300
           IAGPSEILVICDG TDPDWIAMDLFSQAEHDELAQSIL+CPDA Y+  V ASINR L+ M
Sbjct: 241 IAGPSEILVICDGTTDPDWIAMDLFSQAEHDELAQSILICPDAAYLEAVAASINRQLDAM 300

Query: 301 PRKDVIRTSLTDRGALVKVRDMEQACEIANMIAAEHLEISAQEPQQWADQIRHAGAMFLG 360
           PRK+VI TSLT+RGA++KVRDM++ACEIAN+IAAEHLEIS + PQQWAD+IRHAGAMFLG
Sbjct: 301 PRKEVIATSLTNRGAMIKVRDMDEACEIANLIAAEHLEISTENPQQWADKIRHAGAMFLG 360

Query: 361 RFSSESLGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRSSVIRVSEQGAQTLGKIAAELA 420
           RFSSESLGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRSS+++VSE GA TLG++AAELA
Sbjct: 361 RFSSESLGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRSSMLQVSEGGAHTLGQVAAELA 420

Query: 421 YGEGLQAHARSAELRLKK 438
           YGEGLQAHARSAE R KK
Sbjct: 421 YGEGLQAHARSAEYRFKK 438


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 809,105
Number of extensions: 33606
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 354
Effective length of database: 723,567
Effective search space: 256142718
Effective search space used: 256142718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)