BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3960.p
         (277 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096223|ref|YP_001101298.1| putative DNA-methyltransferase ...   449   e-128
gi|134095382|ref|YP_001100457.1| putative site-specific DNA-meth...    71   6e-14

>gi|134096223|ref|YP_001101298.1| putative DNA-methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 269

 Score =  449 bits (1155), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 208/250 (83%), Positives = 228/250 (91%), Gaps = 3/250 (1%)

Query: 13  WLDRVYCEDALDAGGGLARIPDGSVDLLIADPPYGLGKDYGNDSDKLDTAAYLAWTEQWV 72
           W +RV+CEDAL    GLARIPD +VDL+IADPPYGLGKDYGNDSDKL   AYL W EQW+
Sbjct: 4   WRNRVFCEDAL---AGLARIPDAAVDLIIADPPYGLGKDYGNDSDKLAAEAYLQWMEQWI 60

Query: 73  DAVLPKLKPNGSLYIFLTWRNSPEIFVMLKQRMTMINEIIWDRRVPSMGGSVRRYSSVHD 132
           DA LPKLKPNGSLYIFLTWR SPE+FVMLK+RMTMINEIIWDRRVPSMGGS RR+SSVHD
Sbjct: 61  DAALPKLKPNGSLYIFLTWRYSPEVFVMLKKRMTMINEIIWDRRVPSMGGSTRRFSSVHD 120

Query: 133 TIGFFARAKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREH 192
           T+GFFA AKDY+FDLDAIR+PYDA TKKARSRSIFVGAKWLE+GYNPKDVWSVSRLHREH
Sbjct: 121 TVGFFAGAKDYYFDLDAIRVPYDAVTKKARSRSIFVGAKWLELGYNPKDVWSVSRLHREH 180

Query: 193 KERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGRHFTGFELNPDYC 252
           +ERADHPTQKPLE++ERM+KASCPP GVVLDPFMGSGTTAVAA+RCGRHF GFELN +YC
Sbjct: 181 RERADHPTQKPLEIIERMLKASCPPDGVVLDPFMGSGTTAVAAKRCGRHFVGFELNAEYC 240

Query: 253 ELIRQRLDAI 262
            LI +RL A+
Sbjct: 241 ALIEKRLAAL 250


>gi|134095382|ref|YP_001100457.1| putative site-specific
           DNA-methyltransferase (adenine-specific) [Herminiimonas
           arsenicoxydans]
          Length = 674

 Score = 71.2 bits (173), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 53/78 (67%)

Query: 185 VSRLHREHKERADHPTQKPLEVVERMVKASCPPGGVVLDPFMGSGTTAVAARRCGRHFTG 244
           +S ++ + +ER  +PTQKP++++ER++ A+  PG +V D F+GSGTT VAA + GR F G
Sbjct: 326 ISLINSQAEERIGYPTQKPIKLLERIITATTDPGDLVFDGFVGSGTTLVAAAKLGRRFIG 385

Query: 245 FELNPDYCELIRQRLDAI 262
            ++N    ++  +RL  +
Sbjct: 386 SDINLAAIQISAKRLQTL 403


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 601,642
Number of extensions: 25877
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 197
Effective length of database: 736,747
Effective search space: 145139159
Effective search space used: 145139159
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)