BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3959.p (368 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095746|ref|YP_001100821.1| histidinol-phosphate aminotrans... 152 3e-38 gi|134094905|ref|YP_001099980.1| histidinol-phosphate aminotrans... 129 3e-31 gi|134094203|ref|YP_001099278.1| putative threonine-phosphate de... 59 3e-10 >gi|134095746|ref|YP_001100821.1| histidinol-phosphate aminotransferase [Herminiimonas arsenicoxydans] Length = 368 Score = 152 bits (383), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 188/342 (54%), Gaps = 17/342 (4%) Query: 33 AGLVKLDAMENPYVLPVALREELAQRLAALELNRYPVPSYTQLKAAICECLGVPAGYEVL 92 A +VKL + ENP +P + + A LA + RYP + +LKAA+ GVPA + + Sbjct: 34 ARIVKLASNENPLGMPESAK--KAIALAIADAGRYPDGNGFELKAALTAKYGVPAEW-IT 90 Query: 93 LGNGSDELITMLSVACAMPGRTIVAPEPGFVMYGISAQMAGLDYVGVPLRADLSLDLPAM 152 LGNGS++++ + + A PG++++ + F +Y ++ Q G + V + D DL AM Sbjct: 91 LGNGSNDILELSAHAFVQPGQSVIYAQYSFAVYPLATQAVGGRSLVVAAK-DFGHDLEAM 149 Query: 153 LAAIETHKPVITWLGYPNNPTGTLYEMADVLRIIEAAAPYGLVVVDEAYQPFATSTL--- 209 + AIE +I ++ PNNPTGT ++ ++ P +VV+DEAY F L Sbjct: 150 IDAIEDDTRLI-FIANPNNPTGTFIPGHEIESFLKRVPPNVVVVLDEAYTEFLAPELQYD 208 Query: 210 -MPALPRHNNLVVMRTVSKL-GLAGVRLGYLSAAPALLRELDKVRPPYNVNVLTEAAVLF 267 + + ++ NL+V R++SK+ GLAG+R+GY A P + L+++R P+NVN L +AA + Sbjct: 209 SIAWVAQYPNLLVSRSMSKVYGLAGLRIGYGIAQPGITDLLNRIRQPFNVNSLAQAAAIA 268 Query: 268 VLDHLHVLESQAARLRAARSDLASALAALDGVQVFPSAANFILIRVPDAD----KVFAGL 323 L+ ++ A A L A AL + V PS NF+L++V D D ++ L Sbjct: 269 ALNDTEFVKKSAELNAAGYHQLTQAFDALKLMYV-PSCGNFVLVKVGDDDGAGARINLAL 327 Query: 324 LARKVLVKNAGRMHMLLQNCLRITVSSDEENAIFLTALTAAL 365 L + V+V+ G L LRI++ +EENAI L AL AL Sbjct: 328 LKQGVIVRPVGNYG--LPQWLRISIGLEEENAICLAALKKAL 367 >gi|134094905|ref|YP_001099980.1| histidinol-phosphate aminotransferase [Herminiimonas arsenicoxydans] Length = 355 Score = 129 bits (323), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 108/357 (30%), Positives = 171/357 (47%), Gaps = 22/357 (6%) Query: 13 VANVIRPVVRGWHSYHVPSAAGLVKLDAMENPYVLPVALREELAQRLAALELNRYPVPSY 72 + + P V G P GL+KL+ ENPY P + A L YP P Sbjct: 8 IVQTLTPYVPGEQ----PKLPGLIKLNTNENPYP-PSPAVTAAVHAVTADALRLYPDPDS 62 Query: 73 TQLKAAICECLGVPAGYEVLLGNGSDELITMLSVACAMPGRTIVAPEPGFVMYGISAQMA 132 ++LK + V E+ +GNGSDE++ ++ ++ P+ + Y + A++ Sbjct: 63 SELKQVLARYHEVQPN-EIFVGNGSDEVLAFAFMSLLKHAAPLLFPDITYSFYPVYARLF 121 Query: 133 GLDYVGVPLRADLSLDLPAMLAAIETHKPVITWLGYPNNPTGTLYEMADVLRIIEAAAPY 192 G+DYV VPL A + +D A E PN PTG L +A + ++ P Sbjct: 122 GIDYVEVPLNAAMEID----TADYEKQSCGGIIFPNPNAPTGVLAPLAAIEALL-IKQPN 176 Query: 193 GLVVVDEAYQPFATSTLMPALPRHNNLVVMRTVSK-LGLAGVRLGYLSAAPALLRELDKV 251 +VVVDEAY F T +P + ++ NL+V+RT SK LAG+R+G+ P L+ LD+V Sbjct: 177 AVVVVDEAYIDFGGETAIPLIRKYPNLLVVRTFSKSRSLAGLRIGFAMGHPKLIEALDRV 236 Query: 252 RPPYNVNVLTE----AAVLFVLDHLHVLESQAARLRAARSDLASALAALDGVQVFPSAAN 307 + +N + AV D + ++ AA + +R + +AL L G V PS AN Sbjct: 237 KNSFNSYPMDRLALAGAVASYGDEEYFRKTNAA-IVDSREQMTAALEKL-GFSVLPSHAN 294 Query: 308 FILIRVPD--ADKVFAGLLARKVLVKNAGRMHMLLQNCLRITVSSDEENAIFLTALT 362 FI R A ++ GL R ++V++ H + LRI++ + +E + + LT Sbjct: 295 FIFARHASYAAAQLATGLRERAIIVRHFN--HPRINQYLRISIGNPDECNMLIQTLT 349 >gi|134094203|ref|YP_001099278.1| putative threonine-phosphate decarboxylase (L-threonine-O-3-phosphate decarboxylase) [Herminiimonas arsenicoxydans] Length = 332 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 98/218 (44%), Gaps = 25/218 (11%) Query: 43 NPYVLPVALREELAQRLAALELNRYPVPSYTQLKAAICECLGVPAGYEVLLGNGSDELIT 102 NP PV +LA +R P PS T L+AA G P ++L G+ I Sbjct: 30 NPQAYPVP-------QLAPDAWHRLPEPSTTLLEAAQ-NYYGAP---QLLPVAGTQAAIQ 78 Query: 103 MLSVACAMPGRTIVAPEPGFVMYGISAQMAGLDYVGVPLRADLSLDLPAMLAAIETHKPV 162 L A R ++A P + + + AG D +R L A L + Sbjct: 79 ALPRLRAR-SRVVIAA-PSYAEHSYQWRQAGHD-----VREVRYEQLEAALNTCDVMS-- 129 Query: 163 ITWLGYPNNPTGTLYEMADVLRIIEA-AAPYGLVVVDEAYQPFATSTLMPALPRHNNLVV 221 L PNNPTG +LR E AA G ++VDEA+ A + + A L+V Sbjct: 130 ---LCNPNNPTGEKIAPETLLRWAEQLAARGGWLIVDEAFGDTAPAQSVAAFTSQAGLIV 186 Query: 222 MRTVSKL-GLAGVRLGYLSAAPALLRELDKVRPPYNVN 258 R+V K GLAG+RLG+++A LL++L + P+ V+ Sbjct: 187 FRSVGKFFGLAGLRLGFVAAHADLLKQLADLLGPWTVS 224 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 650,646 Number of extensions: 25361 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 4 Length of query: 368 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 285 Effective length of database: 726,862 Effective search space: 207155670 Effective search space used: 207155670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)