BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3957.p
         (212 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096221|ref|YP_001101296.1| imidazole glycerol phosphate sy...   365   e-103

>gi|134096221|ref|YP_001101296.1| imidazole glycerol phosphate
           synthase subunit HisH [Herminiimonas arsenicoxydans]
          Length = 212

 Score =  365 bits (938), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 167/212 (78%), Positives = 192/212 (90%)

Query: 1   MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL 60
           MNKIVVVDYGMGNLRSVAQALR VAPEADVRISGE+ADIRAADR+VLPGQGA+PDCMRSL
Sbjct: 1   MNKIVVVDYGMGNLRSVAQALRKVAPEADVRISGELADIRAADRLVLPGQGAIPDCMRSL 60

Query: 61  RESGVEDAVIEASRTKPLFGVCVGEQMLFDWSEEGDTPGLGLLPGKVVRFELEGLRQDDG 120
           +ESG++DA+++A+R KPLFGVCVGEQ++FDWSEEGDT GLGL PGKVV+F L+   Q+DG
Sbjct: 61  QESGLQDALLDAARNKPLFGVCVGEQLMFDWSEEGDTAGLGLFPGKVVKFRLDNQLQEDG 120

Query: 121 SLFKVPQMGWNHVHQTRTHPLWEGIADDAFFYFVHSYYAVPAETAHVVGQTPYGRDFACA 180
           S FKVPQMGWN VHQ+ +HPLW GIADD++FYFVHSYYAVPA+ AH+ G+T YG  F  A
Sbjct: 121 SRFKVPQMGWNRVHQSLSHPLWNGIADDSYFYFVHSYYAVPAQRAHIAGETSYGALFCSA 180

Query: 181 VARDNIFATQFHPEKSASAGLQLYRNFVHWKP 212
           +ARDNIFATQFHPEKSA+AGLQLY+NFVHW P
Sbjct: 181 IARDNIFATQFHPEKSAAAGLQLYKNFVHWNP 212


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 447,601
Number of extensions: 18986
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 134
Effective length of database: 743,337
Effective search space: 99607158
Effective search space used: 99607158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)