BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3956.p
         (265 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096220|ref|YP_001101295.1| 1-(5-phosphoribosyl)-5-[(5-phos...   467   e-133
gi|134096219|ref|YP_001101294.1| imidazole glycerol phosphate sy...    96   1e-21

>gi|134096220|ref|YP_001101295.1|
           1-(5-phosphoribosyl)-5-[(5-
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase [Herminiimonas
           arsenicoxydans]
          Length = 265

 Score =  467 bits (1202), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/253 (88%), Positives = 242/253 (95%)

Query: 1   MLLIPAIDLKDGHCVRLKQGDMEQATVFSEDPAEMALHWLKQGARRLHLVDLNGAFAGKP 60
           MLLIPAIDLKDGHCVRLKQGDM+QATVFSEDPA+MA HWL+QGARRLHLVDLNGAFAGKP
Sbjct: 1   MLLIPAIDLKDGHCVRLKQGDMDQATVFSEDPADMARHWLEQGARRLHLVDLNGAFAGKP 60

Query: 61  KNEAAVKSILQVVARFAEENEVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP 120
           KNE AVK+ILQ V  +AE+N +EEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP
Sbjct: 61  KNEPAVKAILQAVREYAEKNGIEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP 120

Query: 121 GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGR 180
           GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEV+DLA+KFE YGCE+I+YTDIGR
Sbjct: 121 GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEVIDLAKKFEDYGCESIIYTDIGR 180

Query: 181 DGMMGGVNIEATVRLAQAVTIPIIASGGVHNVGDVEALCRVEDEGIEAVICGRSIYEGTL 240
           DGMMGGVNIEATV+LAQ++TIP+IASGGVHN+ DVEALC V++EGIE VICGRSIYEGTL
Sbjct: 181 DGMMGGVNIEATVKLAQSMTIPVIASGGVHNIKDVEALCAVQEEGIEGVICGRSIYEGTL 240

Query: 241 DLRSGQDRADELT 253
           DLRS QDRADEL+
Sbjct: 241 DLRSAQDRADELS 253


>gi|134096219|ref|YP_001101294.1| imidazole glycerol phosphate
           synthase subunit HisF [Herminiimonas arsenicoxydans]
          Length = 254

 Score = 96.3 bits (238), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 21/220 (9%)

Query: 3   LIPAIDLKDGHCVR-LKQGDMEQATVFSEDPAEMALHWLKQGARRLHLVDLNGAFAGKPK 61
           +IP +D+  G  V+ +   ++  A     DP E+A  +  QGA  L  +D+     G+  
Sbjct: 7   IIPCLDVTAGRVVKGVNFLELRDAG----DPVEIARRYDDQGADELTFLDITATSDGR-- 60

Query: 62  NEAAVKSILQVVARFAEENEVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNPG 121
                  IL ++   A +     IP+ +GGG+R +D + R L+ G   + I ++A+ NP 
Sbjct: 61  -----DLILDIIEAVASQ---VFIPLTVGGGVRAVDDVRRLLNAGADKVGINSSAISNPQ 112

Query: 122 FLHDACSAFPGQ-IIVGLDAK---DGK--VATDGWSKLSGHEVVDLAQKFEGYGCEAIVY 175
            + DA   +  Q I+V +DAK   DG+  V T G  K +G + ++ A+K E  G   I+ 
Sbjct: 113 LVFDASQKYGSQCIVVAIDAKKAADGRWEVFTHGGRKATGLDAIEWAKKMESLGAGEILL 172

Query: 176 TDIGRDGMMGGVNIEATVRLAQAVTIPIIASGGVHNVGDV 215
           T + RDG   G +++ T  ++ A++IP+IASGGV  + D+
Sbjct: 173 TSMDRDGTKVGFDLDLTRSVSDAISIPVIASGGVGGLQDL 212


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 526,518
Number of extensions: 22589
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 185
Effective length of database: 736,747
Effective search space: 136298195
Effective search space used: 136298195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)