BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3955.p
         (254 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096219|ref|YP_001101294.1| imidazole glycerol phosphate sy...   457   e-130
gi|134096220|ref|YP_001101295.1| 1-(5-phosphoribosyl)-5-[(5-phos...   100   5e-23

>gi|134096219|ref|YP_001101294.1| imidazole glycerol phosphate
           synthase subunit HisF [Herminiimonas arsenicoxydans]
          Length = 254

 Score =  457 bits (1175), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 221/253 (87%), Positives = 241/253 (95%)

Query: 1   MALAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIARRYDEQGADELTFLDITASSDGR 60
           M LAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIARRYD+QGADELTFLDITA+SDGR
Sbjct: 1   MTLAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIARRYDDQGADELTFLDITATSDGR 60

Query: 61  DLILDIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVGINTSAVTNPQLVADAANK 120
           DLILDIIEAVASQVFIPLTVGGGVRAV+DVRRLLNAGADKVGIN+SA++NPQLV DA+ K
Sbjct: 61  DLILDIIEAVASQVFIPLTVGGGVRAVDDVRRLLNAGADKVGINSSAISNPQLVFDASQK 120

Query: 121 YGSQCIVVAIDAKRAGDGKWEVYTHGGRNATGLDAVEWARKMAQLGAGEILLTSMDRDGT 180
           YGSQCIVVAIDAK+A DG+WEV+THGGR ATGLDA+EWA+KM  LGAGEILLTSMDRDGT
Sbjct: 121 YGSQCIVVAIDAKKAADGRWEVFTHGGRKATGLDAIEWAKKMESLGAGEILLTSMDRDGT 180

Query: 181 KSGFDLDLTRAVSEAVSIPVIASGGVGGLQDLADGITKGKADAVLAASIFHYGQHTVQEA 240
           K GFDLDLTR+VS+A+SIPVIASGGVGGLQDL DG+  G+ADAVLAASIFHYGQHTVQEA
Sbjct: 181 KVGFDLDLTRSVSDAISIPVIASGGVGGLQDLVDGVKIGRADAVLAASIFHYGQHTVQEA 240

Query: 241 KRFMADQNISMRL 253
           KRFM++Q I+MRL
Sbjct: 241 KRFMSEQGIAMRL 253


>gi|134096220|ref|YP_001101295.1|
           1-(5-phosphoribosyl)-5-[(5-
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase [Herminiimonas
           arsenicoxydans]
          Length = 265

 Score =  100 bits (250), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 29/224 (12%)

Query: 7   IIPCLDVTAGRVVK--------GVNFLELRDAGDPVEIARRYDEQGADELTFLDITASSD 58
           +IP +D+  G  V+           F E     DP ++AR + EQGA  L  +D+  +  
Sbjct: 3   LIPAIDLKDGHCVRLKQGDMDQATVFSE-----DPADMARHWLEQGARRLHLVDLNGAFA 57

Query: 59  GRDLILDIIEAVASQVF----------IPLTVGGGVRAVEDVRRLLNAGADKVGINTSAV 108
           G+      ++A+   V           IP+ +GGG+R ++ + R L+ G   + I T+AV
Sbjct: 58  GKPKNEPAVKAILQAVREYAEKNGIEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAV 117

Query: 109 TNPQLVADAANKYGSQCIVVAIDAKRAGDGKWEVYTHGGRNATGLDAVEWARKMAQLGAG 168
            NP  + DA + +  Q I+V +DAK   DGK  V T G    +G + ++ A+K    G  
Sbjct: 118 KNPGFLHDACSAFPGQ-IIVGLDAK---DGK--VATDGWSKLSGHEVIDLAKKFEDYGCE 171

Query: 169 EILLTSMDRDGTKSGFDLDLTRAVSEAVSIPVIASGGVGGLQDL 212
            I+ T + RDG   G +++ T  ++++++IPVIASGGV  ++D+
Sbjct: 172 SIIYTDIGRDGMMGGVNIEATVKLAQSMTIPVIASGGVHNIKDV 215


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 485,058
Number of extensions: 20765
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 254
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 174
Effective length of database: 736,747
Effective search space: 128193978
Effective search space used: 128193978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)