BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3949.p
         (257 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096213|ref|YP_001101288.1| twin-arginine translocase subun...   342   2e-95

>gi|134096213|ref|YP_001101288.1| twin-arginine translocase subunit,
           sec-independent protein export [Herminiimonas
           arsenicoxydans]
          Length = 229

 Score =  342 bits (876), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 175/227 (77%), Positives = 203/227 (89%)

Query: 25  KAAAVVLVVFLCLMPFAAHIFDVLAAPMIHALPAGSKMIATGVITPFLIPIKVTMLVAVL 84
           KA+ VV+V+FLCLMP+A  I+D LA PM+ ALP GSKMIATGVITPFLIP+KVTMLVA +
Sbjct: 2   KASIVVIVIFLCLMPWAGTIYDFLARPMMLALPEGSKMIATGVITPFLIPVKVTMLVAFI 61

Query: 85  ISLPWVLYQLWAFVAPGLYAHEKRLIAPLVISSSVLFVTGVAFCYFFVFGVVFPFINNFA 144
           ISLPWVLYQ+WAF+APGLY HEK+LIAPLV+SSS LF+ G+AFCYF VFGV+F FINNFA
Sbjct: 62  ISLPWVLYQMWAFIAPGLYTHEKKLIAPLVVSSSALFIAGIAFCYFLVFGVIFHFINNFA 121

Query: 145 PKSVSVAPDIDSYVDFVLTMFVAFGVTFEVPVIVIVLVRMGLVPLAKLKQIRPYVIVGAF 204
           PKS+SVAPDIDSY  FV+TMF+AFG+TFEVPVIVIVLVRMGLV + KLKQIRPYVIVGAF
Sbjct: 122 PKSISVAPDIDSYFGFVMTMFIAFGLTFEVPVIVIVLVRMGLVSVEKLKQIRPYVIVGAF 181

Query: 205 IVAAVVTPPDVMSQLMLAVPLVLLYEIGLLVAPIFERATRAPDAEPS 251
           ++AAVVTPPDVMSQL+LAVPL LLYE+GLL+AP+F + T+AP    S
Sbjct: 182 VIAAVVTPPDVMSQLLLAVPLCLLYEVGLLLAPLFVKITQAPKESES 228


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.142    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 411,358
Number of extensions: 15044
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 177
Effective length of database: 736,747
Effective search space: 130404219
Effective search space used: 130404219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)