BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3947.p
         (393 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096211|ref|YP_001101286.1| putative HtrA-like serine prote...   570   e-164
gi|134095258|ref|YP_001100333.1| putative serine protease [Hermi...   244   4e-66

>gi|134096211|ref|YP_001101286.1| putative HtrA-like serine protease
           [Herminiimonas arsenicoxydans]
          Length = 391

 Score =  570 bits (1470), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 287/388 (73%), Positives = 325/388 (83%), Gaps = 5/388 (1%)

Query: 1   MRRLWLLFAQTVTVGLALWFIVATLKPDWLSGSF--TSRARPAQSTVQMQEAAPNAPALD 58
           MRRLWLLFAQTVTVGLA+ FIV TLKP+W SG F  T + R A S   ++     AP   
Sbjct: 1   MRRLWLLFAQTVTVGLAILFIVTTLKPEWASGVFGGTQKVRSATSIPMLEAPLNTAPTQG 60

Query: 59  SYRHAARQAMPSVVNIFTTTEARPQKSPFQNDPFFRKFFGDQFDEQQQDDKQSSLGSGVI 118
           S+R AA+ AMPSVVNIFT+  A P ++PF +DPFFRKFFGD+FD+QQ+  KQ SLGSGVI
Sbjct: 61  SFRDAAKLAMPSVVNIFTSKTATPSQNPFMDDPFFRKFFGDRFDDQQE--KQVSLGSGVI 118

Query: 119 VSPQGYILTNNHVVEAADKIEVALADGRKASAKVVGIDPETDLAVIKIDLPNLPAITLGH 178
           VS QGYILTNNHVVEAAD+IEVALADGRKA AKVVG DPETDLAV+KIDL NLPAITLGH
Sbjct: 119 VSAQGYILTNNHVVEAADEIEVALADGRKAIAKVVGADPETDLAVVKIDLDNLPAITLGH 178

Query: 179 PENSSVGDVVLAIGNPFGVGQTVTMGIVSALGRNHLGI-NTFENFIQTDAAINPGNSGGA 237
            E + VGDVVLAIGNPFGVGQTVTMGI+SALGRNHLGI + FENFIQTDAAINPGNSGGA
Sbjct: 179 VEEARVGDVVLAIGNPFGVGQTVTMGIISALGRNHLGILDAFENFIQTDAAINPGNSGGA 238

Query: 238 LVDTNGNLLGINTAIYSRTGGNLGIGFAIPMSTAKTVMEAIINHGQVVRGWIGVEPQDIT 297
           L+D NGNLLGINTAIYSR+GG+LGIGFAIP++T K+VM+AII +GQVVRG+IGVEPQDIT
Sbjct: 239 LIDANGNLLGINTAIYSRSGGSLGIGFAIPVTTVKSVMDAIIKNGQVVRGYIGVEPQDIT 298

Query: 298 PELAESFGLGKKTGAIIAGVLKGGPADRAGMRPGDILVSIADKPVADTTEMLNVIAQLTP 357
           PELAESFGL K  GAIIAGVLKGGPAD+AGM+PGDILVS+  K V D  +MLN IAQL+P
Sbjct: 299 PELAESFGLKKSKGAIIAGVLKGGPADKAGMQPGDILVSVEGKAVVDMADMLNQIAQLSP 358

Query: 358 GQEIAMTVLRKSQETKLNITVGKRPPPP 385
           G +    VLR++QE  LN+T+G RP  P
Sbjct: 359 GTKAKFIVLRRNQENTLNVTIGLRPKAP 386


>gi|134095258|ref|YP_001100333.1| putative serine protease
           [Herminiimonas arsenicoxydans]
          Length = 491

 Score =  244 bits (624), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 207/354 (58%), Gaps = 23/354 (6%)

Query: 50  AAPNAPALDSYRHAARQAMPSVVNIFTTTEARPQKSPFQND-----PFFRKFFG------ 98
           AAP+   L  +     +   +VVNI TT +A+  +    ++      FFR+FFG      
Sbjct: 33  AAPSVAGLPDFTDLVEKTGAAVVNIRTTEKAKVNQGNSTSEDEEMQEFFRRFFGVPIPPR 92

Query: 99  ---------DQFDEQQQDDKQSSLGSGVIVSPQGYILTNNHVVEAADKIEVALADGRKAS 149
                    ++ D + +++    +GSG I+S  GY++TN HVV+ AD++ V L D R+  
Sbjct: 93  QQQPAPRGRNKPDAEAEEEVPRGVGSGFIISADGYVMTNAHVVDGADEVYVTLTDKREFK 152

Query: 150 AKVVGIDPETDLAVIKIDLPNLPAITLGHPENSSVGDVVLAIGNPFGVGQTVTMGIVSAL 209
           AK++G D  TD+A++KID  NLP +T+G      VG+ V+AIG+PFG+  TVT GIVSA 
Sbjct: 153 AKIIGADKRTDVALVKIDGSNLPRLTVGDSNKIRVGEWVIAIGSPFGLDNTVTAGIVSAK 212

Query: 210 GRNHLGINTFENFIQTDAAINPGNSGGALVDTNGNLLGINTAIYSRTGGNLGIGFAIPMS 269
            R+      +   IQTD A+NPGNSGG L++  G ++GIN+ IYSR+GG +GI FA+PM 
Sbjct: 213 ARD---TGEYLPLIQTDVAVNPGNSGGPLINMRGEVIGINSQIYSRSGGYMGISFAVPMD 269

Query: 270 TAKTVMEAIINHGQVVRGWIGVEPQDITPELAESFGLGKKTGAIIAGVLKGGPADRAGMR 329
            A  V + +   G+V RG IGV+  ++T ++AES GL +  GA++  V  GGPA++AG+ 
Sbjct: 270 EAMRVSDQLRTSGKVTRGRIGVQIGEVTKDVAESLGLTRAQGALVQRVEAGGPAEKAGVE 329

Query: 330 PGDILVSIADKPVADTTEMLNVIAQLTPGQEIAMTVLRKSQETKLNITVGKRPP 383
            GD+++      V  ++++  V+    PG    +TV RK     LN+ + +  P
Sbjct: 330 AGDVILKFNGVAVERSSDLPRVVGSTKPGTRSTLTVWRKGAMRDLNVMITELEP 383


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 779,179
Number of extensions: 33162
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 2
Length of query: 393
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 309
Effective length of database: 723,567
Effective search space: 223582203
Effective search space used: 223582203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)