BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3946.p
         (254 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096210|ref|YP_001101285.1| hypothetical protein HEAR3055 [...   367   e-103

>gi|134096210|ref|YP_001101285.1| hypothetical protein HEAR3055
           [Herminiimonas arsenicoxydans]
          Length = 260

 Score =  367 bits (943), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/250 (70%), Positives = 205/250 (82%)

Query: 5   INRDELSAYLGRALNTAQYRDYCPNGLQVEGRTTIGRVVSGVTASLALIEAALAWQADAI 64
           I+RD+L+ YL  AL+  ++RD+CPNGLQVEGR  I ++V+GVTASLAL+EAA+A  ADAI
Sbjct: 11  IDRDDLAKYLATALDITRFRDFCPNGLQVEGRREIKKLVTGVTASLALLEAAIAKGADAI 70

Query: 65  LVHHGYFWRGEDMRVIGQKQRRLKLLLSNDINLFGYHLPLDSHPELGNNAQLAKRLDLDA 124
           LVHHGYFWRGED RVIGQK  RLKLLL++D+NLF YHLPLD H E GNNAQLA+RL L A
Sbjct: 71  LVHHGYFWRGEDARVIGQKHGRLKLLLAHDVNLFAYHLPLDMHAEFGNNAQLAQRLGLLA 130

Query: 125 TGRFGENDIGWIGRCHSPAVRTAADLVLLIEKRLGRRPLLIGDPQQAIGQVAWCTGAAQG 184
             RFGE+D+GW+G     ++ T  DL LLIE++LGR PLLIGDP Q +G+  WCTGAAQ 
Sbjct: 131 EARFGEDDLGWLGTVADASIATVGDLALLIERQLGRVPLLIGDPAQKLGKAGWCTGAAQS 190

Query: 185 MLGEAIDAGATVYISGEISEPTVHLARESGTVYLAAGHHATERYGIQALGEHVAAHFGIE 244
           +LG+AI AGA VY+SGEISEPTVHLARESG  YLA GHHATERYG+QALG H+AA FGI 
Sbjct: 191 LLGDAIAAGANVYLSGEISEPTVHLARESGVAYLACGHHATERYGVQALGTHLAAQFGIA 250

Query: 245 HRFIDIDNPV 254
           H FIDIDNPV
Sbjct: 251 HDFIDIDNPV 260


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 516,507
Number of extensions: 21967
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 174
Effective length of database: 736,747
Effective search space: 128193978
Effective search space used: 128193978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)