BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3945.p
         (145 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096208|ref|YP_001101283.1| large-conductance mechanosensit...   198   9e-53

>gi|134096208|ref|YP_001101283.1| large-conductance mechanosensitive
           channel [Herminiimonas arsenicoxydans]
          Length = 137

 Score =  198 bits (504), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 102/144 (70%), Positives = 119/144 (82%), Gaps = 8/144 (5%)

Query: 1   MSMLKDFRAFAIKGNVVDLAVGVIIGGAFGKIVSSLVEDIIMPIVGKIFGGLDFANYYLP 60
           M M+++F+AFA+KGNVVDLAV VIIGGAFGKIV SLV+DIIMP+VGKIFGGLDF+NYYLP
Sbjct: 1   MGMMQEFKAFAVKGNVVDLAVAVIIGGAFGKIVDSLVQDIIMPVVGKIFGGLDFSNYYLP 60

Query: 61  LNGQAYGLPLAEAKKAGAVFAYGNFLTIFINFLILAFIIFQMVRAINKARDLATKNEEAA 120
           LN Q   L L EAKK GAVFAYG+F+TI INFLILAFIIFQMVR ++K +        + 
Sbjct: 61  LNNQDISLTLVEAKKLGAVFAYGSFITILINFLILAFIIFQMVRMLSKLK-------RSE 113

Query: 121 PAAPAP-TPEDVLLLREIRDSLKK 143
           P A AP TPE+V+LLREIRD+LKK
Sbjct: 114 PPAEAPATPEEVVLLREIRDALKK 137


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.143    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 209,630
Number of extensions: 7546
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 72
Effective length of database: 759,812
Effective search space: 54706464
Effective search space used: 54706464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 124 (52.4 bits)