BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3944.p
         (176 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096207|ref|YP_001101282.1| ubiquinol-cytochrome c reductas...   296   3e-82

>gi|134096207|ref|YP_001101282.1| ubiquinol-cytochrome c reductase
           iron-sulfur subunit (Rieske iron-sulfur protein) (RISP)
           (partial) [Herminiimonas arsenicoxydans]
          Length = 202

 Score =  296 bits (759), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 138/176 (78%), Positives = 155/176 (88%)

Query: 1   LATAGAFVSTLQPSERAKAAGAPVEVDISSLAPGEMRTVEWRGKPVWILKRTPEMIASLK 60
           LAT G  VST QPSERAKAAGAPVEVDI+ L PGEM+TVEWRGKPVWILKR+PEMIA+LK
Sbjct: 27  LATTGVLVSTFQPSERAKAAGAPVEVDIAGLVPGEMKTVEWRGKPVWILKRSPEMIATLK 86

Query: 61  QTDGEVADPNSKRTDFSQTPDYALNEWRSVRKDILVVVGICPHLGCSPSSRFQTGPQTSL 120
           QTD EVADPNS+R     TP+YA NE+RS++ +ILV VGIC HLGCSP +RFQTG Q SL
Sbjct: 87  QTDAEVADPNSERKPDELTPEYARNEYRSIKPEILVAVGICTHLGCSPVTRFQTGAQPSL 146

Query: 121 PDDWHGGFLCPCHGSTFDLAGRVYKNKPSPDNLQVPRYMFEGENKLVIGKDEKGEA 176
           PDDWHGGFLCPCHGSTFDLAGRV+KNKP+PDNL+VPR+MF  ++KLVIGKDEKGEA
Sbjct: 147 PDDWHGGFLCPCHGSTFDLAGRVFKNKPAPDNLEVPRHMFLSDSKLVIGKDEKGEA 202


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 363,361
Number of extensions: 14255
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 100
Effective length of database: 749,927
Effective search space: 74992700
Effective search space used: 74992700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)