BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3943.p
         (468 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096206|ref|YP_001101281.1| cytochrome b [Herminiimonas ars...   813   0.0  

>gi|134096206|ref|YP_001101281.1| cytochrome b [Herminiimonas
           arsenicoxydans]
          Length = 467

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/466 (84%), Positives = 429/466 (92%)

Query: 3   AFHEKKLPDDAPAAAKALNWIDARFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVLVI 62
           AFHEK+LP DAP A KALNW+DARFPL+ATWKAHLSEYYAPKNFNF Y+FGSLALLVLVI
Sbjct: 2   AFHEKQLPADAPIADKALNWVDARFPLSATWKAHLSEYYAPKNFNFLYVFGSLALLVLVI 61

Query: 63  QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMLRGLL 122
           QIVTGIFLVMHYKPDA LAFASVEYIMRDVPWGWLVRYMHSTGASAFF+VVY+HMLRGLL
Sbjct: 62  QIVTGIFLVMHYKPDAALAFASVEYIMRDVPWGWLVRYMHSTGASAFFVVVYIHMLRGLL 121

Query: 123 YGSYRKPRELVWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 182
           YGSYRKPRELVWLFGVGIFLCLM EAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS
Sbjct: 122 YGSYRKPRELVWLFGVGIFLCLMAEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 181

Query: 183 LLIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVAAHIIALHEVGSNNPDGVEIKEKTDEN 242
           L IRGDYVVSDATLNRFF+FHVIAIPLVLIGLV AHI+ALHEVGS+NPDGVEIKEK D  
Sbjct: 182 LWIRGDYVVSDATLNRFFAFHVIAIPLVLIGLVVAHIVALHEVGSSNPDGVEIKEKLDAK 241

Query: 243 GVPLDGVPFHPYYTVHDIFGVSIFLLVFSAVIFFAPEMGGYFLEYNNFIPADSLKTPLHI 302
           G+PLDG+PFHPYY+VHDIF V+IFL VF+AV+FFAPEMGGYFLEYNNF+PAD LKTP HI
Sbjct: 242 GIPLDGIPFHPYYSVHDIFIVTIFLFVFTAVVFFAPEMGGYFLEYNNFVPADPLKTPPHI 301

Query: 303 APVWYFTPFYSILRATTADFMGWLIAGVAAYVALLVFKSRLTAKLKMASIVIGLVIIAGM 362
           APVWYFTPFYSILRA T+DFM WL AGVAAYVAL++ K+RL +K K+A+ VIGL++I  M
Sbjct: 302 APVWYFTPFYSILRAVTSDFMVWLAAGVAAYVALIILKTRLASKFKVAAAVIGLLVIVTM 361

Query: 363 LVFDAKFWGVVLMGLSVVILGGLPWLDQSQVKSIRYRPSWHKYIYLVFGIAFVILGYLGV 422
            V DAKFWGVVLMG+SV+I+ GLPWLD S VKSIRYRP WHKY+Y+VFGI FV+LGYLGV
Sbjct: 362 FVTDAKFWGVVLMGVSVMIMFGLPWLDVSPVKSIRYRPDWHKYVYIVFGIMFVVLGYLGV 421

Query: 423 QPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVPERVVYHPH 468
           Q PT IGT VSQ+ +FIY GFFLLMPWWSA GTFKPVP+RVV+HPH
Sbjct: 422 QAPTPIGTAVSQIGTFIYFGFFLLMPWWSAMGTFKPVPDRVVFHPH 467


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.145    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 933,928
Number of extensions: 40929
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 383
Effective length of database: 720,272
Effective search space: 275864176
Effective search space used: 275864176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)