BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3942.p
         (254 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096205|ref|YP_001101280.1| putative cytochrome c1 precurso...   430   e-122

>gi|134096205|ref|YP_001101280.1| putative cytochrome c1 precursor
           [Herminiimonas arsenicoxydans]
          Length = 254

 Score =  430 bits (1105), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 195/254 (76%), Positives = 226/254 (88%)

Query: 1   MTLLKKVIAALALLPALACANEGGYPLDRAPDRTKDVASLQNGAKLFVNYCLNCHSASSM 60
           M LLKK+IAAL LLP LA A  G +PLDRAPD TKD+A+LQNGA+LFVNYCL+CHSAS+M
Sbjct: 1   MKLLKKLIAALVLLPGLALAAGGEFPLDRAPDHTKDLAALQNGARLFVNYCLSCHSASAM 60

Query: 61  RYNRLRDIGLTEEQIKENLMFSGEKVGDLMKISMTPQDAKAWFGATPPDLSVIARARASE 120
           RYN+L+DIGLTEEQIK NL+F+ +KVG +M I+M P+DAK WFGATPPDLSVIARA+AS 
Sbjct: 61  RYNKLQDIGLTEEQIKNNLLFTSDKVGSMMTIAMAPKDAKEWFGATPPDLSVIARAKASS 120

Query: 121 AGSGPDWIYTYLRSYYTDDSRPTGWNNMLFPNVGMPHVLWELQGIRKAKFVEEKDPHDAN 180
           AGSGPDW+YTYLR+YY DD+R TGWNN+ FPNVGMPHVLWELQG+R+AKFVEEKDPHDA+
Sbjct: 121 AGSGPDWLYTYLRTYYKDDTRATGWNNLTFPNVGMPHVLWELQGVREAKFVEEKDPHDAS 180

Query: 181 KTIHKFAGFEQVKPGKMSTAEYDNNVADLVAYLQWMGEPAQNTRKRLGVWVLLFLGLFSV 240
           K +HKFAGFEQV PGKM+  EYD +VADLV+++ WM EPAQNTRKRLGVWVLLFLG+  V
Sbjct: 181 KVVHKFAGFEQVTPGKMTALEYDKSVADLVSFMTWMAEPAQNTRKRLGVWVLLFLGVCIV 240

Query: 241 LAWRLNASYWKNIK 254
           L WRLNASYWK+IK
Sbjct: 241 LTWRLNASYWKDIK 254


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 441,109
Number of extensions: 16473
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 174
Effective length of database: 736,747
Effective search space: 128193978
Effective search space used: 128193978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)