BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3939.p
         (540 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096447|ref|YP_001101522.1| putative dipeptide transport bi...   100   1e-22

>gi|134096447|ref|YP_001101522.1| putative dipeptide transport
           binding transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 528

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 203/499 (40%), Gaps = 66/499 (13%)

Query: 27  GFTRRDMMRTLMAGSLLTLGSTSLMAVSSSAMAQTPKRGGKLRMATQTSSTADTLDPAKA 86
           GF R  +    + G+L   G+ +    S +A A   K G         S+   +LDP   
Sbjct: 3   GFKREKLSALALMGALAWSGNLA----SHAAFAADLKIG--------LSADVSSLDPHYL 50

Query: 87  AHATDYTRVNLFYNGLTKLDS--KLGPQMVLAEELLTTDAITWTVKLRKDVIFHDGKPFT 144
             A + T  +  ++ L  +D+  KL P   LA      DA TW  KLR+DV FHDG PFT
Sbjct: 51  NIAPNVTFSSHIFDALVNVDANGKLVPG--LATSWRAVDATTWEFKLRRDVKFHDGSPFT 108

Query: 145 PADVVYSLMR-HKDPAVASKVKVVADQIESVKATGPNEVQIKLAGANADLPVILSTAQFL 203
             DV++SL R  K  +          QI + K   P  V++  A     L + +ST  F+
Sbjct: 109 ADDVIFSLDRPAKLTSSPGPFTAYTKQIVAKKIVDPYTVRLMTAAPYGPLALDMSTV-FI 167

Query: 204 IIRDGTTEFRTPN--------GTGAFKCKEFTPGVRTIGVRNENYWKSGMPYLDEVEVFG 255
           + +    +  T +        GTG +K   F  G R    RN+ YW  G    D+V    
Sbjct: 168 VSKKAAEKASTDDFNNGKALIGTGPYKFLSFKRGDRIEVTRNDQYW-GGKSDWDKVTFRI 226

Query: 256 IPDEAARVNALLSGDVHWINDVNARSTERVRTSAGYTVIETRTGLYTDLVIRQDVAPGNS 315
           I + A R+ ALLSGDV  I  V      R++++A ++  +  +  +  +    D +PG S
Sbjct: 227 ITNSAPRLAALLSGDVDAIEGVPTADLSRLKSNAKFSFAQKIS--WRTIFWELDQSPGAS 284

Query: 316 MDFT------------------LGMKYLMDREQIKNAAFRGYAVTANDQPIDPTNRFYFP 357
              T                    M   ++R+ +      G AV A++  + P    Y  
Sbjct: 285 RYVTDKSGKPLPNNPLHDVRVRQAMSKAINRQALVERTMEGLAVPASNI-VSPGIFGYND 343

Query: 358 GLPQRPYDPDKAKFHLQKAGVLGSTIPLVASAAATGSVDIAVLMQQSAQ---KIGLKLDV 414
            L    YDP+ AK  L +AG       L         ++   ++Q  AQ   +IG++  V
Sbjct: 344 ALKVEVYDPEGAKKLLAQAG-YPHGFALTIHGPNDRYINDEQVVQTVAQFWNRIGIQTKV 402

Query: 415 KRVPPDGYWSN----QWMKVPLGFGNINPRPSADILFTQLFKSD------AQWNESGWKN 464
             +P   Y++     ++    LG+G +    + D     L  +         WN   + N
Sbjct: 403 ATLPLSVYFAKARAGEFSVSLLGWGTL----AGDFGLRTLVGTPNVETGWGSWNWGKYSN 458

Query: 465 AQFDQLLVAARGETDFNKR 483
              D+L+ ++    D  KR
Sbjct: 459 PAVDKLIASSLSSVDQGKR 477


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,026,645
Number of extensions: 42189
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 454
Effective length of database: 716,977
Effective search space: 325507558
Effective search space used: 325507558
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)