BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3937.p
         (323 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096021|ref|YP_001101096.1| threonine deaminase [Herminiimo...   158   3e-40

>gi|134096021|ref|YP_001101096.1| threonine deaminase [Herminiimonas
           arsenicoxydans]
          Length = 507

 Score =  158 bits (400), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 154/263 (58%), Gaps = 1/263 (0%)

Query: 24  TPLLRAEKIEKQLGCELYLKPETLQITGAFKIRGALNKSLSLPKEAIANGIIATSSGNHA 83
           +PL  A  + ++ G ++Y K E +Q   +FK+RGA NK   LP   +  G+I  S+GNHA
Sbjct: 21  SPLELAPTLSQRFGNQIYFKREDIQSVFSFKLRGAYNKMAHLPPAQMKRGVICASAGNHA 80

Query: 84  QGLAYAARMLGVKALLVLPVTTPKIKIANTQALGAEVILFDGDTAARWKRVAEIAEENHY 143
           QG+A +A  LG +A++V+P TTP +KI   +A G EV+LF    +  ++    + ++   
Sbjct: 81  QGVALSAARLGCRAVIVMPTTTPSVKIEAVKARGGEVVLFGDSYSDAYQHALTLEKKLKL 140

Query: 144 VMVHAFEDPVVMAGQGTIGCEIIDDLPD-VDTVIIPIGGGGLISGIATALKETRPSIRVV 202
             VH F+DP V+AGQGTIG EI+      +  + +PIGGGGLI+GI   +K  RP I+++
Sbjct: 141 TFVHPFDDPDVIAGQGTIGMEILRQHSGPIHAIFVPIGGGGLIAGIGAYVKAVRPDIKII 200

Query: 203 GAEPALTPKYYQSRINKQRTSLPLKNTIADGLRISVPGQNPYPIIEKYVDEIVLVEDEHI 262
           G +   +    +S  + +R ++      ADG  + + G+  + + + YVD+I+LV  + +
Sbjct: 201 GVQTVDSDAMARSLQSNRRVTMTDVGLFADGTAVKLVGEETFRLAKLYVDDIILVSTDEV 260

Query: 263 IEGMRILAKDAKLIAEPAASIGI 285
              ++ + +D + I EP+ ++ +
Sbjct: 261 CSAIKDVFQDTRSILEPSGALSV 283


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 571,805
Number of extensions: 21227
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 241
Effective length of database: 730,157
Effective search space: 175967837
Effective search space used: 175967837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)