BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3919.p (891 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095329|ref|YP_001100404.1| ATP-dependent protease Hsp 100 ... 532 e-152 gi|134095621|ref|YP_001100696.1| clpA-clpP serine protease ATP-d... 276 5e-75 >gi|134095329|ref|YP_001100404.1| ATP-dependent protease Hsp 100 [Herminiimonas arsenicoxydans] Length = 860 Score = 532 bits (1370), Expect = e-152, Method: Compositional matrix adjust. Identities = 316/801 (39%), Positives = 463/801 (57%), Gaps = 68/801 (8%) Query: 39 HLFLALLDQPQSDFSLIARRSGISIDSLQADLEREIATFKNGNTRTPVLSP---HLQTLF 95 H+ +ALL Q S + +R+G +I+ + + K+ R P +S +Q Sbjct: 33 HVLVALLSQDDSSTRSLLQRAGANINGM-------VTALKSALERLPKVSGTGGQVQISR 85 Query: 96 EHAWLIASLDG-----GNPAIRSSHLLLALL-TQSELSQLAYRGSKLFAKFKVAELKHDL 149 + L+ D G+ I + LLLAL +SE ++A Sbjct: 86 DLTALLNLADKESQMHGDEFIATEMLLLALTEDKSEAGKIARENG--------------- 130 Query: 150 YKLTEGSVEALAESVSGQGPAGDMNESADPVGEMNARPSGKTPALDQYTTQLTQRARDGK 209 LT +++A ++V G +A G+ AL +YT LT+RAR GK Sbjct: 131 --LTRKALQAAIKAVRGSSKVD------------SAEGEGQREALKKYTMDLTERARIGK 176 Query: 210 IDPVIGRDGEIRQAVDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPQALQGVE 269 +DPVIGRD EIR+ + IL RR +NNP+L GE GVGKTA+VEGLA RI G+VP++L+G Sbjct: 177 LDPVIGRDDEIRRTIQILQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPESLKGKR 236 Query: 270 IHTLDMGLLQAGASVKGEFENRLKNVIDEVKKSPHPIILFIDEAHTMIGAGGQAGQNDAA 329 + +LDM L AGA +GEFE RLK V+ E+ + I+FIDE HT++GAG G DA Sbjct: 237 VLSLDMASLLAGAKYRGEFEERLKAVLTELAEDEGQTIVFIDEMHTLVGAGKAEGAMDAG 296 Query: 330 NLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVIKVEEPTEEVACAMLRAMAPL 389 N+LKPALARGEL + ATT EY+KY EKDAAL RRFQ + V+EPT E A+LR + Sbjct: 297 NMLKPALARGELHCVGATTLDEYRKYIEKDAALERRFQKVLVDEPTVEATIAILRGLQEK 356 Query: 390 MEKHFGVRVYDEAISEAVRLSHRYISGRQLPDKAISVLDTACAKVALGQNATPALLEGVS 449 E H GV + D AI A LSHRYI+ R LPDKAI ++D A AK+ + ++ P +++ + Sbjct: 357 YEVHHGVDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAAAKIKIEIDSKPEVMDRLD 416 Query: 450 RRLERIAAEMAALEREAASGSLHEARLTELRSQHEAALAEQTDLKARWVQERG------- 502 RR+ ++ E A+ +E S + RL + + E E DL+ W E+ Sbjct: 417 RRVIQLKIEREAIRKEKDEAS--QKRLALIEEEIEKLGREYADLEEIWKAEKSAAQGSQH 474 Query: 503 LNERIQQARAALEDANRNGQTGQDADAARAELKQLLDELKQ------HQGETPMVPVQVD 556 + E I++AR +E+A R + ++ L +L +LK G+ +V QV Sbjct: 475 IKEAIEKARLQMEEATRQSDWQRVSELQYKTLPELEAQLKNAVTGEASAGKPQLVRTQVG 534 Query: 557 GHVVAEIVAGWTGIPLGKMVKDEIKTVLGLDALLRERVLGQPQATSAVAQRVRTSRANLD 616 +AE+V+ TGIP+ +M++ E + +L ++ L +RV+GQ +A AV+ +R SRA L Sbjct: 535 AEEIAEVVSRATGIPVSRMMQGEREKLLQMEDALHKRVVGQHEAIVAVSDAIRRSRAGLG 594 Query: 617 DPGKPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSEYQEAHTVSGLKGSPPG 676 DP +P G F+F+GP+GVGKTE ALA L+ E L+ I+MSE+ E H+V+ L G+PPG Sbjct: 595 DPDRPYGSFMFLGPTGVGKTELCKALASFLFDTEDSLVRIDMSEFMEKHSVARLIGAPPG 654 Query: 677 YVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVFDKGVMDDGEGREIDFKNT 736 YVGY EGG LTEAVRR PY V+LLDE+EKAHPDV + QV D G M DG+GR +DFKNT Sbjct: 655 YVGYEEGGYLTEAVRRKPYCVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNT 714 Query: 737 IIILTSNVASAQMMQACLNKTAQELPTPDELDALIRPQLVKAFKPAFLGRL-KVIPYYPI 795 +I++TSN+ S ++ A E P + + ++ F+P F+ R+ +++ ++ + Sbjct: 715 VIVMTSNLGSHKIQ-------AMEGNEPALIKMAVMAEVQSHFRPEFINRIDEIVVFHAL 767 Query: 796 ADEVLVEIIKLKLGRIAKRIA 816 ++ + I K++L + +R+A Sbjct: 768 DEKNIGAIAKIQLHTLEQRLA 788 >gi|134095621|ref|YP_001100696.1| clpA-clpP serine protease ATP-dependent specificity subunit [Herminiimonas arsenicoxydans] Length = 767 Score = 276 bits (705), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 163/411 (39%), Positives = 237/411 (57%), Gaps = 37/411 (9%) Query: 35 VDLEHLFLALLDQPQSDFSLIARRSGISIDSLQADLEREIATFKNGNTRT---------- 84 + +EHL LALLD P + + + R ++ID DL + + F NT T Sbjct: 25 ITVEHLLLALLDNPSA--AEVLRACAVNID----DLRKTLTNFIGDNTPTVPGAAEVDTQ 78 Query: 85 PVLSPHLQTLFEHAWL-IASLDGGNPAIRSSHLLLALLTQSELSQLAYRGSKLFAKFKVA 143 P L Q + + A + + S G + +++L+A+ + + + Y + + V Sbjct: 79 PTLG--FQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVTRLDVV 136 Query: 144 E-LKHDLYKLTEGSVEALAESVSGQGPAGDMNESADPVGEMNARPSGKTPALDQYTTQLT 202 + H + K + V+ +E P+ D + K ALDQ+T L Sbjct: 137 NFISHGVRKDQQIDVQKSSEGAE-DAPSADGQQ--------------KESALDQFTQNLN 181 Query: 203 QRARDGKIDPVIGRDGEIRQAVDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP 262 + A +GKIDP+IGR+GE+ + + L RRR+NNP+L GEAGVGKTA+ EGLA RI G+VP Sbjct: 182 KLATEGKIDPLIGREGEVERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWRITQGEVP 241 Query: 263 QALQGVEIHTLDMGLLQAGASVKGEFENRLKNVIDEVKKSPHPIILFIDEAHTMIGAGGQ 322 + LQ +++LDMG L AG +G+FE RLK V+ ++K +P+ ILFIDE HT+IGAG Sbjct: 242 EVLQNAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQLKDNPNG-ILFIDEIHTIIGAGSA 300 Query: 323 AGQN-DAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVIKVEEPTEEVACA 381 +G DA+NLLKPAL+ G+L+ I ATT++E++ FEKD AL+RRFQ I V EPT E Sbjct: 301 SGGTLDASNLLKPALSNGQLKCIGATTFTEFRGVFEKDHALSRRFQKIDVNEPTVEQTIQ 360 Query: 382 MLRAMAPLMEKHFGVRVYDEAISEAVRLSHRYISGRQLPDKAISVLDTACA 432 +LR + E+H GV+ A+ A L+ R+I+ R LPDKAI V+D A A Sbjct: 361 ILRGLKSRFEEHHGVKYSSSALVSAAELAARFINDRHLPDKAIDVIDEAGA 411 Score = 176 bits (446), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 106/317 (33%), Positives = 178/317 (56%), Gaps = 12/317 (3%) Query: 560 VAEIVAGWTGIPLGKMVKDEIKTVLGLDALLRERVLGQPQATSAVAQRVRTSRANLDDPG 619 + +I++ IP + +D+ + ++ L+ V GQ A A+ ++ +RA L Sbjct: 430 IEDIISKIARIPAQTVNQDDRSKLQTIERDLKNVVFGQDPALEALGSAIKVARAGLGKTD 489 Query: 620 KPKGVFLFVGPSGVGKTETALALADVLYGGERKLITINMSEYQEAHTVSGLKGSPPGYVG 679 KP G FLF GP+GVGKTE A LA ++ G E LI +MSEY E H VS L G+PPGYVG Sbjct: 490 KPIGSFLFSGPTGVGKTEAAKQLAFIM-GIE--LIRFDMSEYMERHAVSRLIGAPPGYVG 546 Query: 680 YGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLELFFQVFDKGVMDDGEGREIDFKNTIII 739 + +GG+LTEA+ + P++V+LLDE+EKAHPD+ + QV D G + D GR+ DF+N III Sbjct: 547 FDQGGLLTEAITKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKADFRNVIII 606 Query: 740 LTSNVASAQMMQACLNKTAQELPTPDELDALIRPQLVKAFKPAFLGRLK-VIPYYPIADE 798 +T+N + + + + T ++ DE+ + R F P F RL +I + + +E Sbjct: 607 MTTNAGAESLQKRSIGFTDKK-EAGDEMADIKR-----MFTPEFRNRLDAIISFRALDEE 660 Query: 799 VLVEIIKLKLGRIAKRIAENHKAEFSYDKALVEAVLARCTEVDSGARNVDNILNGSLLPE 858 +++ ++ L ++ +++ E K E + L + + + GAR + ++ + Sbjct: 661 IILRVVDKFLMQLEEQLHEK-KVEAIFTDNLRTFLAKKGFDPLMGARPMSRLIQDMIRKA 719 Query: 859 IAESVL-ARMAEGQSIS 874 +A+ +L R+ G ++ Sbjct: 720 LADELLFGRLVTGGKVT 736 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,528,304 Number of extensions: 61286 Number of successful extensions: 297 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 288 Number of HSP's successfully gapped: 3 Length of query: 891 Length of database: 1,000,347 Length adjustment: 90 Effective length of query: 801 Effective length of database: 703,797 Effective search space: 563741397 Effective search space used: 563741397 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)