BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3917.p
         (268 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095751|ref|YP_001100826.1| putative outer membrane protein...    86   2e-18
gi|134094293|ref|YP_001099368.1| putative outer membrane protein...    73   1e-14
gi|134094541|ref|YP_001099616.1| flagellar motor protein MotD [H...    60   1e-10

>gi|134095751|ref|YP_001100826.1| putative outer membrane protein 3a
           (II*;G;d) [Herminiimonas arsenicoxydans]
          Length = 205

 Score = 85.9 bits (211), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 67/100 (67%), Gaps = 6/100 (6%)

Query: 170 QATLTPEGKRILDEIAATMLKLKGRHVEII---GNTDNEGLRASNISLSLARADAVKAYL 226
           +A L P+GK  LD++A+   KLK  ++E+I   G+TD+ G  A N  LS+ RA+AVK YL
Sbjct: 104 KAVLKPDGKAKLDDLAS---KLKDLNLEVIIAVGHTDSIGSDAYNQKLSIRRAEAVKGYL 160

Query: 227 SAKGVDESLLTTSGQGPDRPVASNATAEGRAKNRRIEFRI 266
             KG+D   + T G+G  +PVA+N TA GRA+NRR+E  +
Sbjct: 161 VGKGIDAKRVYTEGKGEKQPVATNKTAAGRAQNRRVEIEV 200


>gi|134094293|ref|YP_001099368.1| putative outer membrane protein;
           putative peptidoglycan-associated (lipo)-protein
           [Herminiimonas arsenicoxydans]
          Length = 225

 Score = 73.2 bits (178), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 59/105 (56%)

Query: 164 VSFESGQATLTPEGKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVK 223
           +SF +G++ +    + ILD  A  ++      V IIG+TD+ G  A N  LS  RA   +
Sbjct: 108 ISFATGRSDINSSFRPILDRFATGLVDNPAATVTIIGHTDSTGSDAINNPLSFDRASRTR 167

Query: 224 AYLSAKGVDESLLTTSGQGPDRPVASNATAEGRAKNRRIEFRIAK 268
            YL+ +GV    +   G+G   PVASNA   GRA+NRR+E  +A+
Sbjct: 168 DYLAGRGVAPQRIHVDGRGSREPVASNANEAGRARNRRVEIYVAE 212


>gi|134094541|ref|YP_001099616.1| flagellar motor protein MotD
           [Herminiimonas arsenicoxydans]
          Length = 261

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 7/126 (5%)

Query: 145 LRVSTSEQGLLDNALANRVVSFESGQATLTPEGKRILDEIAATMLKLKGRHVEIIGNTDN 204
           +RV+ + +G+  +   N  V F  G+A L+ + ++ L  +A  + K+    +++ G+TDN
Sbjct: 122 VRVTQTNRGV--SVEINASVLFAPGEARLSAQSEKALRAVAEVLNKVDN-DIQVEGHTDN 178

Query: 205 ----EGLRASNISLSLARADAVKAYLSAKGVDESLLTTSGQGPDRPVASNATAEGRAKNR 260
                 +  SN  LS  RA +V       G++E  L   G G ++PV SN T EGR +NR
Sbjct: 179 VPINNAMFPSNWELSAVRASSVVRLFLESGMNEKRLVAMGHGANQPVDSNETTEGRLRNR 238

Query: 261 RIEFRI 266
           R++  I
Sbjct: 239 RVQLMI 244


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.311    0.126    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 443,082
Number of extensions: 16869
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 4
Length of query: 268
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 188
Effective length of database: 736,747
Effective search space: 138508436
Effective search space used: 138508436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)