BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3906.p (507 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 392 e-110 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 392 e-110 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 361 e-101 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 355 2e-99 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 346 1e-96 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 392 bits (1008), Expect = e-110, Method: Compositional matrix adjust. Identities = 268/527 (50%), Positives = 348/527 (66%), Gaps = 43/527 (8%) Query: 1 MKIGIRLGGSFMLLTLLACVLIIASILTLTRIGQHWDNFSGTVLNKQDYATQGYIKLGES 60 +KIG+RLG +F ++ LL +++ + L + Q + ++ A Q + + Sbjct: 6 LKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQ-------ATVRMEEAAEQERLSIQWH 58 Query: 61 VHNFKNYI-----LR--GKDYDQQFLADMDA----IANLVAQYRKLGVDDPKEEALLQKI 109 N N I +R ++ QQF +M A I L + L + + + L+ + Sbjct: 59 AGNSANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESL-IHSEEGKKLMSAV 117 Query: 110 SSGERNYRQALAKVQSLKAAGTSITDIDASISGADKILGAGFAGLLAIAHENTNGTGQ-- 167 Y +V LKA G+ A+ A KI+ A + A E + T Q Sbjct: 118 GDKRTVYMDIRKEVFKLKADGSP-----AAEEEAKKII----ASKMDPALETYSKTVQDV 168 Query: 168 -------------KISAAISAGKSIELGVGVLVVVLAAALATLATRSITRPVREAVQIAK 214 ++ ++G+ L +G + + L+A LA L +RSITRP+ AV++A+ Sbjct: 169 VDFQQVTFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVAR 228 Query: 215 TVAAGDLGSRIEVTRKDETGELLQALKDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLD 274 TVA GDL +RIEV DETG+LLQAL+DMN L + V VRTG +TI TAS QIA GNLD Sbjct: 229 TVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLD 288 Query: 275 LSARTEQQASSLEETAAAMEQITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVST 334 LS+RTE+QASSLEETA++ME++TSTV++NAD+ARQAN +A S S VA + G+VVS VV T Sbjct: 289 LSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDT 348 Query: 335 MDEIQASAREIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRS 394 M++I +SA++I +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRS Sbjct: 349 MEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRS 408 Query: 395 ATAAKEIKDLIGNSVEKVETGSKLVKDAGATIEELVMNVRNVTQIMSEISAASGEQEAGI 454 A AAKEIK LIG+SV+KV+ GSKLV +AG T+EE+V +V+ VT IMSEI AAS EQ AGI Sbjct: 409 AAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGI 468 Query: 455 EQVNQAIVQMDTVTQQNAALVEEAAAATEALKEQARRLAESVSVFRL 501 EQVNQAI QMD VTQQNAALVEEAAAA E+L EQA +LAE+VSVF+L Sbjct: 469 EQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 392 bits (1007), Expect = e-110, Method: Compositional matrix adjust. Identities = 263/526 (50%), Positives = 342/526 (65%), Gaps = 45/526 (8%) Query: 1 MKIGIRLGGSFMLLTLLACVLIIASILTLTRIGQHWDNFSGTVLNKQ----DYATQGYIK 56 +KIG+RLG +F LL +L + + +L L + + TVL ++ + Q +IK Sbjct: 6 LKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAK------ATVLMEEATIKERLAQQWIK 59 Query: 57 LGES--VHNFKNYILRGKDYDQQFLADMDAIANLV-------------AQYRKLGVDDPK 101 E+ V F + D+ +M AI+ V A+ +KL + Sbjct: 60 GIETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAE 119 Query: 102 EEALLQKISSGERNYRQAL-AKVQS-----LKAAGTSITDIDASISGADKILGAGFAGLL 155 + A I N R+A A++Q+ +K A DA I + ++ A Sbjct: 120 KRATYTAIRDDVMNLREARGAELQNAIANKMKPAA------DAYIQSVEAVVNAQINNF- 172 Query: 156 AIAHENTNGTGQKISAAISAGKSIELGVGVLVVVLAAALATLATRSITRPVREAVQIAKT 215 E+ G ++ + + + + +G++ + L LA + TRSIT+P+ AV +A+ Sbjct: 173 ----EDAKG---RVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARL 225 Query: 216 VAAGDLGSRIEVTRKDETGELLQALKDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDL 275 VA+GDL RI V KDETG+LLQALKDMN SL + VR+G DTI TAS QIA GNLDL Sbjct: 226 VASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDL 285 Query: 276 SARTEQQASSLEETAAAMEQITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVSTM 335 S+RTE+QASSLEETA++ME++TSTV++NAD+ARQAN +A + S VA + G VVS VV TM Sbjct: 286 SSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTM 345 Query: 336 DEIQASAREIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA 395 D I SAR+I +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA Sbjct: 346 DGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 405 Query: 396 TAAKEIKDLIGNSVEKVETGSKLVKDAGATIEELVMNVRNVTQIMSEISAASGEQEAGIE 455 AAKEIK LI +SV+KV+TGSKLV +AG T+ E+V +V+ VT IM+EI AAS EQ AGIE Sbjct: 406 AAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIE 465 Query: 456 QVNQAIVQMDTVTQQNAALVEEAAAATEALKEQARRLAESVSVFRL 501 QVNQAI QMD VTQQNAALVEEAAAA E+L EQA LA++VS+F+L Sbjct: 466 QVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 361 bits (927), Expect = e-101, Method: Compositional matrix adjust. Identities = 208/321 (64%), Positives = 259/321 (80%), Gaps = 1/321 (0%) Query: 185 VLVVVLAAALATLATRSITRPVREAVQIAKTVAAGDLGSRIEVTR-KDETGELLQALKDM 243 V+ ++L +A T ITRP+ EA+++A++VA GDL +R ++ +DE G LL AL M Sbjct: 197 VIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMAETQDEPGLLLSALGRM 256 Query: 244 NSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAAMEQITSTVRRN 303 ++L R V +R G+DTI TAS++IA GNLDLS+RTEQQASSLEETA++ME++TSTV++N Sbjct: 257 QANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETASSMEELTSTVKQN 316 Query: 304 ADHARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASAREIAEIISVIDGIAFQTNILA 363 AD++RQAN +A + S VA + G VVS VV TM I SA++I +II VIDGIAFQTNILA Sbjct: 317 ADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGVIDGIAFQTNILA 376 Query: 364 LNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIKDLIGNSVEKVETGSKLVKDAG 423 LNAAVEAARAGEQGRGFAVVA+EVRNLAQRSA AAKEIK LIG+SVEKV+ GSKLV +AG Sbjct: 377 LNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAGSKLVAEAG 436 Query: 424 ATIEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIVQMDTVTQQNAALVEEAAAATE 483 T++E+V V+ V IM+EI+AAS EQ GIEQVNQA+ QMD VTQQNAALVEEAAAA E Sbjct: 437 TTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQNAALVEEAAAAAE 496 Query: 484 ALKEQARRLAESVSVFRLGVG 504 +L++QAR LAE+VSVFR+G G Sbjct: 497 SLQDQARNLAEAVSVFRVGSG 517 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 355 bits (912), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 205/328 (62%), Positives = 260/328 (79%) Query: 177 KSIELGVGVLVVVLAAALATLATRSITRPVREAVQIAKTVAAGDLGSRIEVTRKDETGEL 236 ++I +G + V+LA +A R I RP+ +AVQIA++VAAGDL +I V +ETG+L Sbjct: 188 RNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNSTNETGQL 247 Query: 237 LQALKDMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAAMEQI 296 LQALKDMN SL + V VR G++TI AS +IA GN DLS+RTE QA SLEETA++ME++ Sbjct: 248 LQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEEL 307 Query: 297 TSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASAREIAEIISVIDGIA 356 TSTVR+NAD+ARQAN + S +EVA + G VVS+VV TM I+ S+R+I +II VID IA Sbjct: 308 TSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIA 367 Query: 357 FQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIKDLIGNSVEKVETGS 416 FQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSA AAKEIK LI +SV KV+ GS Sbjct: 368 FQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGS 427 Query: 417 KLVKDAGATIEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIVQMDTVTQQNAALVE 476 KLV AG+T++E+V +V++V IMSEI++AS EQ GIEQVNQAI QMD +TQQNAALVE Sbjct: 428 KLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVE 487 Query: 477 EAAAATEALKEQARRLAESVSVFRLGVG 504 +AAAA +++++QA L+ +V++F+L G Sbjct: 488 QAAAAAQSMQDQAVELSGAVAIFKLDAG 515 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 346 bits (888), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 203/320 (63%), Positives = 249/320 (77%), Gaps = 1/320 (0%) Query: 183 VGVLVVVLAAAL-ATLATRSITRPVREAVQIAKTVAAGDLGSRIEVTRKDETGELLQALK 241 VGVL+ ++ A+ A R+IT P++E + T+A+GDL S IEV ++E G L+ L+ Sbjct: 195 VGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLMLGLQ 254 Query: 242 DMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAAMEQITSTVR 301 M L V VR GS I TA+T+IA GNLDLS+RTEQQA+SLEETA++ME++TSTV+ Sbjct: 255 KMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTSTVK 314 Query: 302 RNADHARQANAMAGSVSEVASRSGLVVSDVVSTMDEIQASAREIAEIISVIDGIAFQTNI 361 +N D+ARQAN +A S S VA + G VVSDVV+TMD I SAR+I +II VIDGIAFQTNI Sbjct: 315 QNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQTNI 374 Query: 362 LALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEIKDLIGNSVEKVETGSKLVKD 421 LALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI +SV KV+ G++LV + Sbjct: 375 LALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLVAE 434 Query: 422 AGATIEELVMNVRNVTQIMSEISAASGEQEAGIEQVNQAIVQMDTVTQQNAALVEEAAAA 481 AG T+ E+V +V+ VT IMSEI AAS EQ AGIEQVN AIVQMD VTQQNAALVE+AAAA Sbjct: 435 AGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAAA 494 Query: 482 TEALKEQARRLAESVSVFRL 501 +L++QA L+ VSVF+L Sbjct: 495 ASSLRDQATNLSTVVSVFKL 514 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.127 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 674,297 Number of extensions: 22302 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 15 Length of query: 507 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 421 Effective length of database: 716,977 Effective search space: 301847317 Effective search space used: 301847317 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)