BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3904.p (591 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Hermini... 514 e-147 gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase... 387 e-109 gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase... 102 7e-23 >gi|134095998|ref|YP_001101073.1| acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 514 bits (1325), Expect = e-147, Method: Compositional matrix adjust. Identities = 258/574 (44%), Positives = 361/574 (62%), Gaps = 15/574 (2%) Query: 5 YTPPLREFAFVLDEVLQAPQVLRALPAHAELDGELMMQVLEEAGRFAANVVAPLNAIGDR 64 Y PLR+ FVL E+L A L+ + + ++D +++ QVLEE G+F + V+ PLN GDR Sbjct: 4 YIAPLRDMQFVLHELLHAEDELKQMQKYVDIDADIINQVLEEGGKFTSEVLFPLNHSGDR 63 Query: 65 EGCRLE--HGAVSTPPGFVRAYAQFCEGGWPALACAPEHGGQGLPHVLDCALYEMLSAAN 122 EGC L+ V+ P GF AYAQ+ GWP+L+C PE+GGQGLP VL + +EML+++N Sbjct: 64 EGCTLDPVTHEVTPPAGFKAAYAQYVAAGWPSLSCDPEYGGQGLPMVLQNSFFEMLNSSN 123 Query: 123 HGWTMYPGLLHGAYACLATHGSPQLQARYLEQIASGQWLATMCLTEAQAGSDLGQLRTRA 182 WTMYPGL HGAY CL HG+ + +A YL ++ SG+W TMCLTEA G+DLG LR++A Sbjct: 124 QAWTMYPGLSHGAYECLHEHGTAEQKALYLPKLVSGEWTGTMCLTEAHCGTDLGLLRSKA 183 Query: 183 VPQEDGSYRITGDKIFISGGEHDLTDNIVHLVLARLPDALPGSKGLSLLLAPRVLPD--- 239 PQ DGSY+ITG KIFIS GEHD+ NI+HLVLARLPDA G+ G+SL + P+ LP+ Sbjct: 184 EPQADGSYKITGSKIFISAGEHDMVQNILHLVLARLPDAPQGTHGISLFIVPKFLPNADG 243 Query: 240 --GSRNGIHCTGIEHKMGIHGSATCSLHFEQAQAWLVGEPGRGLAAMFVMMNAARLHVGA 297 G+RN I C +E KMGIHG+ATC ++ + A W++G+P +GL AMFVMMNAARL VG Sbjct: 244 TLGARNPIFCGALEEKMGIHGNATCQMNIDGATGWMIGQPNKGLNAMFVMMNAARLGVGM 303 Query: 298 QGLGLAEAAWQRASAYARERRQSRAPGGTG-----TDLIVRHPAVQKLLMEQRCRIEGAR 352 Q LGL E A+Q A YA++R Q R+ G D I+ HP V+++L+ + EG R Sbjct: 304 QSLGLTEVAYQNALLYAKDRLQMRSLTGVKAADKPADPIIVHPDVRRMLLTAKAYAEGGR 363 Query: 353 MLTCWAGLLLDLAEHDTDAAMRRVHHERLELITPVIKAFLTDQGFQCASRALQVFGGHGY 412 + + L +D + D A+R+ + + L+TP+IKAFLTD G+ S A+QV+GGHGY Sbjct: 364 AFSSYVALQIDRELNHPDEAVRKDAADEVALLTPIIKAFLTDNGWIATSEAMQVYGGHGY 423 Query: 413 VVETGIEQFMRDARITMIYEGSNEIQAIDFLLRKALADDRRRLHDFLALVSADAEDVSV- 471 + E G+EQ++RDARI MIYEG+N IQ++D L RK L D+ +L F + E+ Sbjct: 424 IAEWGMEQYVRDARINMIYEGTNTIQSLDLLGRKILLDNGAKLRKFGEKIRVFIEENGTD 483 Query: 472 --LGDQARLLKNAVDKLKDYAQRIAQQAAQEPTLPYFLADEMLRLTGHVALGWMWLRAGR 529 + + L + +K+ I +A Q P A LR+ GH+ + + + R Sbjct: 484 EAMSEFITPLADLAEKVTKLTMEIGMKAFQNPDEAGAAAVPYLRVAGHLVYAYFFAQMAR 543 Query: 530 RALSALAADPRYYGSKRDTACYHFAFIFAEVHQL 563 AL+ +Y +K T+ ++FA + E L Sbjct: 544 LALAKQDGGDNFYKAKLATSRFYFARLLPETAML 577 >gi|134093872|ref|YP_001098947.1| putative acyl-CoA dehydrogenase [Herminiimonas arsenicoxydans] Length = 596 Score = 387 bits (994), Expect = e-109, Method: Compositional matrix adjust. Identities = 232/588 (39%), Positives = 321/588 (54%), Gaps = 30/588 (5%) Query: 3 MSYTPPLREFAFVLDEVLQAPQVLRALPAHAELDGELMMQVLEEAGRFAANVVAPLNAIG 62 M Y PL++ FV++E+ V LP + E + VLEE RF + V+APLN G Sbjct: 1 MRYVAPLKDMLFVMNELADLAAV-NTLPGCEDATPETVEAVLEENARFCSEVIAPLNQTG 59 Query: 63 DREGCRLEHGAVSTPPGFVRAYAQFCEGGWPALACAPEHGGQGLPHVLDCALYEMLSAAN 122 DR+ + GAV+T PGF A+ + GW + GGQGLP ++ EML+AAN Sbjct: 60 DRQPSAWKDGAVTTTPGFKEAFKAYGAAGWQGVQHPVYFGGQGLPKMVATPCMEMLNAAN 119 Query: 123 HGWTMYPGLLHGAYACLATHGSPQLQARYLEQIASGQWLATMCLTEAQAGSDLGQLRTRA 182 + + P L GA L T GS + +L +G+W TM LTE QAGSDL +R+RA Sbjct: 120 LSFALCPLLTDGAIEALMTAGSEAQKETFLPNFIAGKWTGTMNLTEPQAGSDLAMVRSRA 179 Query: 183 VPQEDGSYRITGDKIFISGGEHDLTDNIVHLVLARLPDALPGSKGLSLLLAPRVLPD--- 239 VPQ DG+Y+I+G KIFI+ GEHD+ +NIVHLVLAR PDA G KG+SL + P+ L + Sbjct: 180 VPQGDGTYKISGTKIFITYGEHDMAENIVHLVLARTPDAPEGVKGISLFVVPKFLVNADG 239 Query: 240 --GSRNGIHCTGIEHKMGIHGSATCSLHFEQ---AQAWLVGEPGRGLAAMFVMMNAARLH 294 G+RN +C IEHK+GI S T L F A LVGE RGL MF+MMNAAR Sbjct: 240 SLGARNDAYCVSIEHKLGIRASPTAVLQFGDHGGAIGTLVGEENRGLETMFIMMNAARFA 299 Query: 295 VGAQGLGLAEAAWQRASAYARERRQSRAPGGTGTDL-IVRHPAVQKLLMEQRCRIEGARM 353 VG QG+ +AE A+Q+A +YA++R QS+ G+ T + I+ P V+++LM R +IE AR Sbjct: 300 VGIQGIAVAERAYQKAVSYAKDRVQSKDLEGSATAVSIIHQPDVRRMLMSMRAQIEAARA 359 Query: 354 LTCWAGLLLDLAEHDTDAAMRRVHHERLELITPVIKAFLTDQGFQCASRALQVFGGHGYV 413 L D+A H DA +R H E + PVIK + T+ AS LQ+ GG G++ Sbjct: 360 LAYVGAAAFDIAHHHADAEVRSSHQAFYEFLVPVIKGWATEMSIDVASTGLQIHGGMGFI 419 Query: 414 VETGIEQFMRDARITMIYEGSNEIQAIDFLLRKALADDRRRLHDFLALV--------SAD 465 ETG Q+ RDARI IYEG+ IQA D + RK D D +A V +A Sbjct: 420 EETGAAQYYRDARILTIYEGTTAIQANDLVGRKTARDGGAVARDIIARVRKTEAELAAAA 479 Query: 466 AEDVSVLGDQARLLKNAVDKLKDYAQRIAQ---QAAQEPTLPYFLADEMLRLTGHVALGW 522 + D+ +G ++D++ Y Q + ++PY L+L G V GW Sbjct: 480 SADLQAIGRHLAAASTSLDEVVAYVVANIQADIKGVFAGSVPY------LKLAGIVLGGW 533 Query: 523 MWLRA---GRRALSALAADPRYYGSKRDTACYHFAFIFAEVHQLSSVI 567 RA ++ L+A D ++Y +K TA + + ++ S I Sbjct: 534 QMARAALIAQQKLNAQEGDAKFYQAKIATARFFADYYLSQAGAYRSAI 581 >gi|134094276|ref|YP_001099351.1| putative acyl-CoA dehydrogenase (flavoprotein), putative aidB protein [Herminiimonas arsenicoxydans] Length = 551 Score = 102 bits (253), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 127/287 (44%), Gaps = 25/287 (8%) Query: 161 LATMCLTEAQAGSDLGQLRT--RAV--PQEDGSYRITGDKIFISGGEHDLTDNIVHLVLA 216 L M +TE Q GSD+ T RAV Y +TG K F S D HLVLA Sbjct: 177 LIGMGMTEKQGGSDVRSNTTVARAVHGSGRGADYALTGHKWFFSAPMCD-----AHLVLA 231 Query: 217 RLPDALPGSKGLSLLLAPRVLPDGSRNGIHCTGIEHKMGIHGSATCSLHFEQAQAWLVGE 276 R + GLS PR PDGSRN + ++ K+G +++ + F+ A +VGE Sbjct: 232 RTEN------GLSCFFVPRWRPDGSRNAVLIQQLKDKLGNRSNSSSEVEFQDAYGVMVGE 285 Query: 277 PGRGLAAMFVMMNAARLHVGAQGLGLAEAAWQRASAYARERRQSRAPGGTGTDLIVRHPA 336 GRG+ + M N RL GL A +A +AR R P + P Sbjct: 286 EGRGIPTIIEMANHTRLDCVIGSAGLMRNALVQAIHHARHRSAFGHP-------LAEQPL 338 Query: 337 VQKLLMEQRCRIEGARMLTCWAGLLLDLAEHDTDAAMRRVHHERLELITPVIKAFLTDQG 396 ++ +L + E A +L D + D + R ++TP K ++ + Sbjct: 339 MRNVLSDLALESEAATLLMLRLARAADASRDAPDDLLERAWR---RILTPAAKFWVCKRV 395 Query: 397 FQCASRALQVFGGHGYVVETGIEQFMRDARITMIYEGSNEIQAIDFL 443 + + ++V+GG+GY+ + + R+A + I+EGS + +D L Sbjct: 396 LEFSGECMEVWGGNGYIENAPMARMFREAPVNSIWEGSGNVMCLDVL 442 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,135,633 Number of extensions: 48282 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 3 Length of query: 591 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 504 Effective length of database: 713,682 Effective search space: 359695728 Effective search space used: 359695728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)