BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3903.p (251 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 223 9e-60 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 206 8e-55 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 206 1e-54 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 131 4e-32 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 120 5e-29 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 223 bits (567), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 115/242 (47%), Positives = 168/242 (69%), Gaps = 7/242 (2%) Query: 1 MSELVLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVLP---A 57 M+ VL++A L+ +YG +QA+ IDL + +G + T+IG NGAGK+T L AI G LP Sbjct: 1 MTTTVLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRV 60 Query: 58 QGSVRYQGQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQAQPL- 116 G + Y GQA++ + V +A+VPE R +F+ MS+++NLL+G F R Q + Sbjct: 61 DGHIEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTR---NDKQGIA 117 Query: 117 DQLATVFELFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVK 176 D + F +FPRLKER +Q AGTLSGGE+QMLA+ RA+M+ P+LL+LDEPS+GL+P +V+ Sbjct: 118 DDMEKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVE 177 Query: 177 EILQIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAY 236 +I +++ + GI++LLVEQNAR ALQ A YV+E G +TMQG++ ++ D +V +AY Sbjct: 178 KIFEVIRSVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVREAY 237 Query: 237 LG 238 LG Sbjct: 238 LG 239 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 206 bits (525), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 107/234 (45%), Positives = 152/234 (64%), Gaps = 3/234 (1%) Query: 6 LEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVLPA-QGSVRYQ 64 L V L Y KV LHD+ +++ G I ++G NGAGKSTL+ +I+G+ P QG + + Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 65 GQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQAQPLDQLATVFE 124 G+ + + +GI+ +PE R++F MSV +NL LG F L A ++LA V+E Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAF--LVTNSAVVRERLARVYE 121 Query: 125 LFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVKEILQIVSE 184 +FPRLKER +Q AGT+SGGE+ M++IGR +MA+P+LL++DEPSLGL+P VKE ++ Sbjct: 122 IFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRR 181 Query: 185 LRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAYLG 238 + GI+VLLVEQNAR L + YGYVL G+V +G + LA + V AY G Sbjct: 182 INALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYFG 235 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 206 bits (523), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 158/240 (65%), Gaps = 2/240 (0%) Query: 1 MSELVLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVL-PAQG 59 MS +L+V L +YG ++A I +++ G +IG NGAGKS+ L AI GV+ PA G Sbjct: 1 MSAPLLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASG 60 Query: 60 SVRYQGQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQAQPL-DQ 118 S+ G+ V+ + + V G+ALVPE R +F+ SVEDNL+LGGF + + L D Sbjct: 61 SITLGGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDD 120 Query: 119 LATVFELFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVKEI 178 + +F+LFPRLKERR+QQAG+LSGGE+QML I R +M+ P LL++DE SLGLAP+I+ + Sbjct: 121 IDRMFQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFL 180 Query: 179 LQIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAYLG 238 ++ +L G+S+LLVEQ A AL YV+E G V + G S+ L DA V++AYLG Sbjct: 181 FPVLVDLNRQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEAYLG 240 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 131 bits (329), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 128/241 (53%), Gaps = 12/241 (4%) Query: 6 LEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQ-GSVRYQ 64 L V+ L+ SYG Q + D+ L++E G + ++GPNGAGK+T I+G++P+ G + Sbjct: 5 LIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 65 GQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLL-------LGGFRRLRLRQAQPLD 117 G + R + +R G++ +P+ +F +SVEDN+ + G + + Q LD Sbjct: 65 GVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRLD 124 Query: 118 QLATVFELFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGLAPRIVKE 177 L ++ ++ R QA +LSGGER+ + I RA+ P ++LDEP G+ P V E Sbjct: 125 TLLADLQI----EKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIE 180 Query: 178 ILQIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDAQVIQAYL 237 I +IV L+ GI VL+ + N R L D Y++ G V G + D V + YL Sbjct: 181 IQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYL 240 Query: 238 G 238 G Sbjct: 241 G 241 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 120 bits (302), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 127/252 (50%), Gaps = 14/252 (5%) Query: 5 VLEVAQLRASYGKVQALHDIDLKLERGSIATVIGPNGAGKSTLLNAIMGVL-PAQGSVRY 63 L+ + ++G + A + L+ G++ +VIGPNGAGKST +N + G P GS+ + Sbjct: 347 CLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEF 406 Query: 64 QGQAVERWSLEQRVMAGIALVPERRELFSSMSVEDNLLLGGFRRLRLRQAQPLDQLATVF 123 GQ Q G+A + ELF M+ +N+L+G R R L +L + F Sbjct: 407 MGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSYF 466 Query: 124 EL-------------FPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPELLMLDEPSLGL 170 + L + ++A L G ++ L I RA+ P+LL+LDEP+ GL Sbjct: 467 HDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAGL 526 Query: 171 APRIVKEILQIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTMQGESARLAGDA 230 ++++++++ L + I+VLLVE + + +D+ VL+ GKV G A + + Sbjct: 527 THGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAEVRSNP 586 Query: 231 QVIQAYLGFGKK 242 VI+AY G G+ Sbjct: 587 AVIEAYFGTGET 598 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 412,101 Number of extensions: 15246 Number of successful extensions: 220 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 46 Length of query: 251 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 172 Effective length of database: 740,042 Effective search space: 127287224 Effective search space used: 127287224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)