BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3900.p (383 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093634|ref|YP_001098709.1| putative formate transporter bi... 92 5e-20 gi|134096101|ref|YP_001101176.1| hypothetical protein HEAR2943 [... 62 4e-11 gi|134094935|ref|YP_001100010.1| putative extracellular ligand-b... 62 7e-11 gi|134093984|ref|YP_001099059.1| putative amino acid ABC transpo... 60 1e-10 >gi|134093634|ref|YP_001098709.1| putative formate transporter binding protein [Herminiimonas arsenicoxydans] Length = 380 Score = 91.7 bits (226), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 102/380 (26%), Positives = 159/380 (41%), Gaps = 36/380 (9%) Query: 11 AGVLASMLACAGMAHAELTIGVVMSLTGPGSGLGIPAKNGFSLW------PDTIGGEKVK 64 A VL A G+ + + IG + LTG +G G + + G K++ Sbjct: 16 ASVLQVAYAEDGITDSTILIGQTIGLTGTVAGTVKEMNEGAHAYIAAVNKQGGVNGRKIE 75 Query: 65 LIILDDATDPTQASKNARRLVAEDKVDLIIGSAAVPPTLAIADVALETQTVQLAISPIET 124 + LDD P ++ NA+ L+ +DKV + S P TLAI L T V L I+P Sbjct: 76 IRTLDDQYLPEKSRANAKVLIEKDKVFALFQSRGTPHTLAILP-QLATSNVPL-IAPSTG 133 Query: 125 AEG----KDAWTFRLPQSTAVMAGGVVEQMKKMGVKTIGFLGYS--DSYGENWLKEMQRL 178 AE + W F + +E K +G K++G L Y D+ G + L + Sbjct: 134 AESLHTPVNRWVFNVRAKYQDEVVKAIEHFKTLGFKSVGLLTYEKDDALGLDGLNGFNKG 193 Query: 179 ATAAGMKMGTVERFSRADTSVTAQALRVVSSNPDAVLVVASGSGAAMPHKALIERGYKGK 238 + VE F R +V AL++V + PDA+++V+SG+ KA+ +G + + Sbjct: 194 MAEYKLTPAFVEIFPRLKPNVNEVALKLVKAAPDALIIVSSGANTVDVIKAIRAQGGRMQ 253 Query: 239 IFQTHSAASRDLIRLGGKDVEGSYVISGPAVVPEALPDSNPSKKLALDFVTRYEKQFGAG 298 I + +S+D I+ G D G VI P L S K E Q A Sbjct: 254 IMTLSNNSSQDFIKDLGPDATG--VILSQVTPPPNLASSGLGK----------EFQLAAK 301 Query: 299 SRNLFAAHTYDAQLVLQKVVPEALKKAKPGTPAFRTALKEALETAGPIQISQGTLRYSAK 358 + ++ + KV+ E L++A G R LE+ + + +L YS K Sbjct: 302 ATGATISYAAMEGYLSAKVMVEGLRRA--GRNLTRDGFMRGLESMQRVDMGGLSLSYSEK 359 Query: 359 DHFG--------LGDDARIM 370 DH G +G D R + Sbjct: 360 DHTGSNFVELTLIGKDGRYI 379 >gi|134096101|ref|YP_001101176.1| hypothetical protein HEAR2943 [Herminiimonas arsenicoxydans] Length = 394 Score = 62.0 bits (149), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 83/315 (26%), Positives = 130/315 (41%), Gaps = 32/315 (10%) Query: 58 IGGEKVKLIILDDATDPTQASKNARRLVAEDKVDLIIGSAAVPPTLAIADVALETQTVQL 117 + G +++L+ LDD D A+ NA LV +++V + + P T AI + L + L Sbjct: 85 VNGRRIELLTLDDKFDAKLAAANAELLVKKERVFALFQNRGTPLTEAITPI-LAANKIPL 143 Query: 118 AISPIETAEGKDA------WTFRLPQSTAVMAGGVVEQMKKMGVKTIGFLGYSDSYGENW 171 I+P A A + R V G VE +G +IG L DS+G + Sbjct: 144 -IAPSTGAMVFHAPVNPLLFNVRAKYQDEVRKG--VEHFATIGSSSIGLLHVDDSFGTDG 200 Query: 172 LKEMQRLATAAGMKMGTVERFSRA--DTSVTAQALRVVSSNPDAVLVVASGSGAAMPHKA 229 L M V F R D VTA A +V +NP+A+++V+S + KA Sbjct: 201 LAGFVSAMNERNMIPAIVASFPRTKPDYEVTANA--IVKANPNALIIVSSSAHTIAIIKA 258 Query: 230 LIERGYKGKIFQTHSAASRDLIRLGGKDVEGSYVISGPAVVPEALPDSNPSKKLALDFVT 289 + +G +I + +S+ ++ G G +V + P N T Sbjct: 259 IRAKGSLVQIMTLSNNSSQSFVQELGPAGTG-------VIVSQITPAPN-------SVTT 304 Query: 290 RYEKQFGAGSRNLFAAHTYDAQ--LVLQKVVPEALKKAKPGTPAFRTALKEALETAGPIQ 347 K+F A ++ A +Y A V KV+ E LK+A G R ALE+ Sbjct: 305 GLGKEFMALAKANNATVSYAAMEGFVAAKVLVEGLKRA--GRNLTREGFVRALESIQKFD 362 Query: 348 ISQGTLRYSAKDHFG 362 + + Y+ DH G Sbjct: 363 MGGLMVSYAPTDHTG 377 >gi|134094935|ref|YP_001100010.1| putative extracellular ligand-binding receptor [Herminiimonas arsenicoxydans] Length = 426 Score = 61.6 bits (148), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 28/231 (12%) Query: 28 LTIGVVMSLTGPGSGLGIPAKNGFSLWPDTIG------GEKVKLIILDDATDPTQASKNA 81 + +GV +S TG + LG + + LW + G++VK+ +LDD ++ A Sbjct: 70 IHLGVTVSKTGKYAALGAMNEKAYRLWERDVNRRGGLLGKQVKITMLDDKSEADLAGNLY 129 Query: 82 RRLVAEDKVDLIIGSAAVPPTLAIADVALETQTVQLAISPIET----AEGKDAWTFRLPQ 137 R+L+ +DKVDL++G + T A+A++ E + L S +G++ + F + Sbjct: 130 RKLIIDDKVDLVLGPYSSDLTEAVANIT-ELHRMPLLASGASADSIWQQGRN-YVFGIYV 187 Query: 138 STAVMAGGVVEQMKKMGVKTIGFLGYSDSYGEN-------WLKEMQ-RLATAAGMKMGTV 189 +++ + G +E + K G+ I + DS+ ++ W K + ++ +A K G+ Sbjct: 188 TSSKYSVGFLELLVKSGINRIAIVAADDSFSQSISIGTAEWAKRYELQMVLSATFKKGS- 246 Query: 190 ERFSRADTSVTAQALRVVSSNPDAVLVVASGSGAAMPHKALIERGYKGKIF 240 AD + QA R+ + +AV+V A +AL + G+ K + Sbjct: 247 -----ADIRDSIQAARL--AGAEAVIVAGHFDDAVNGRRALKDIGWTPKAY 290 >gi|134093984|ref|YP_001099059.1| putative amino acid ABC transporter [Herminiimonas arsenicoxydans] Length = 381 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 86/318 (27%), Positives = 135/318 (42%), Gaps = 27/318 (8%) Query: 28 LTIGVVMSLTGPGSGLGIPAKNGFSLWPD-------TIGGEKVKLIIL--DDATDPTQAS 78 + IG V +TG + +G +NG + + TIGG+KVK +L DDA+DP QA+ Sbjct: 29 IKIGSVAPITGTDAHMGKDNENGARMAVEDLNAKGTTIGGKKVKFQLLAEDDASDPKQAT 88 Query: 79 KNARRLVAEDKVDLI--IGSAAVPPTLAIADVALETQTVQLAISPIETAEGKDAWTFRLP 136 A++LV V +I + S P I A Q A +P T +G FR+ Sbjct: 89 AAAQKLVDAGVVAVIGHLNSGTTIPASRIYANAGIPQVSPSATNPKYTQQGFKT-AFRVV 147 Query: 137 QSTAVMAGGVVEQ--MKKMGVKTIGFLGYSDSYGENWLKEMQRLATAAGMKMGTVERFSR 194 + A + G V+ Q +K +G K++ + +YG+ E + AAG + + + Sbjct: 148 ANDAQL-GQVLGQYAVKTLGGKSVAVIDDRTAYGQGVADEFAKGVKAAGGSIVASQYTNN 206 Query: 195 ADTSVTAQALRVVSSNPDAVLVVASGSGAAMPHKALIERGYKGKIFQTHSAASRDLIRLG 254 T + + + PD + + + + + G K + L L Sbjct: 207 KATDFNSILTSIKAKKPDIIFFGGMDAVGGPMLRQMKQLGINAKFMGGDGICTGSLPGLA 266 Query: 255 GKDVEGSYVISGPA-VVPEALPDSNPSKKLALDFVTRYEKQFGAGSRNLFAAHTYDAQLV 313 G + + V+ A VPEA +K DF Y+K+FG AA+ YDA Sbjct: 267 GTALGDNQVVCAEAGGVPEA------RRKGVEDFRASYKKRFGV-EVVYTAAYAYDA--- 316 Query: 314 LQKVVPEALKKAKPGTPA 331 V EA+KKA PA Sbjct: 317 -TNAVVEAMKKANSWEPA 333 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.131 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 708,206 Number of extensions: 28302 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 4 Length of query: 383 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 300 Effective length of database: 726,862 Effective search space: 218058600 Effective search space used: 218058600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)