BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3898.p (254 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 87 8e-19 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 86 2e-18 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 82 3e-17 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 79 2e-16 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 73 1e-14 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 87.0 bits (214), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 113/252 (44%), Gaps = 19/252 (7%) Query: 6 QAALVTGGASGLGAETVRQLVQAGARVSI-LDVNMEAAQALADELRCHAVRCDITDSASV 64 + ALV+GG GLGA L AG V++ N + A D++D A Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNADTAAEFRKNTSIPVFCWDVSDYAQC 62 Query: 65 QAALDAAQEANGAPRILINCAGIGGAKRMVGKDG--SAMPLEDFSRIVNVNLIGTFNVIR 122 Q + + G IL+N AGI +D M + ++N NL FN+ R Sbjct: 63 QEGIRQVELDVGPIDILVNNAGIT-------RDAVLHHMTPGQWIEVINTNLGSVFNMSR 115 Query: 123 LVAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITAMTLPLARDLAQHG 182 V E + E G I+ +SV GQ+GQA YAA+K GI T LA + A+ Sbjct: 116 NVI------EGMRERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKN 169 Query: 183 IRVVTIAPGLFLTPLLYKLPDEVQQSLAASIPFPKRLGKAEEYAQLALHIATNLS--LNG 240 I V IAPG T ++ +P EV + + IP LG + A+L + +A N S + G Sbjct: 170 ITVNAIAPGYCDTDMVSAIPQEVLEKIVTGIPV-GHLGTGSDIARLVVFLADNASGFITG 228 Query: 241 EVIRLDGALRLA 252 ++G +A Sbjct: 229 ATFDVNGGQFMA 240 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 28/249 (11%) Query: 8 ALVTGGASGLGAETVRQLVQAGARV--SILDVNMEAAQALA----DELRCHAVRCDITDS 61 ALVTGG GLG +L G +V + N A + LA A CD++D Sbjct: 5 ALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVSDY 64 Query: 62 ASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSAMPLEDFSRIVNVNLIGTFNVI 121 S Q + ++ G +L+N AGI + M K M D+ ++ NL FN+ Sbjct: 65 DSAQQCVALIKKEIGEIDVLVNNAGI--TRDMTFKK---MEKTDWDAVMGTNLDSVFNMT 119 Query: 122 RLVAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITAMTLPLARDLAQH 181 + V + + E G I+ +SV A G GQ Y+A+K G+ T LA ++A+ Sbjct: 120 KPVC------DGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARK 173 Query: 182 GIRVVTIAPGLFLTPLLYKLPDEV-QQSLAASIPFPKRLGKAEEYAQLALHIAT------ 234 + V TI+PG T ++ +P +V + IP RLGK EE A L ++A+ Sbjct: 174 AVTVNTISPGYIGTKMVTAIPQDVLDTKIVPQIPM-GRLGKPEEVAGLVAYLASDEAAFV 232 Query: 235 ---NLSLNG 240 N+++NG Sbjct: 233 TGANIAING 241 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 82.0 bits (201), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 114/253 (45%), Gaps = 27/253 (10%) Query: 1 MQLQGQAALVTGGASGLGAETVRQLVQAGARVSILDVNMEAAQALADEL--RCHAVRCDI 58 ++L GQ ALVTG + G+G + L + G +V + A A+++ L V D+ Sbjct: 4 VELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVVLDV 63 Query: 59 TDSASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSAMPLED--FSRIVNVNLIG 116 D+A A +D Q+ G IL+N AGI +D AM ++D + ++ NL Sbjct: 64 NDAARSVALIDEIQKEFGTVTILVNNAGIT-------QDQLAMRMKDEEWDSVIATNLTS 116 Query: 117 TFNVIRLVAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITAMTLPLAR 176 + R V M A+ G I+ SV G GQ YAA+K G+ M+ LAR Sbjct: 117 VGRLSRAVLRGMMKAK------HGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAR 170 Query: 177 DLAQHGIRVVTIAPGLFLTPLLYKLPDEVQQSLAASIPFPKRLGKAEEYA---------Q 227 ++ I V +APG T + L ++ +L +P RLG E+ A Q Sbjct: 171 EIGSRNITVNCVAPGFIDTDMTKTLSEQQISALLQQVPLG-RLGVPEDIAAAVSFLASPQ 229 Query: 228 LALHIATNLSLNG 240 + T L +NG Sbjct: 230 ASYITGTTLHVNG 242 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 79.3 bits (194), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 104/195 (53%), Gaps = 17/195 (8%) Query: 57 DITDSASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSAMPLEDFSRIVNVNLIG 116 DITD+ + + AL+ EA G ++L+N AGI G M + +++V+L G Sbjct: 59 DITDAEATKVALETLLEA-GPVQVLVNNAGIHSDAVFPG-----MTSAQWHSVIDVSLHG 112 Query: 117 TFNVIRLVAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITAMTLPLAR 176 FNV + + P+ G I+ +S+AA G GQ Y+A+KG + + T LA Sbjct: 113 FFNVTQPLTM------PMIRTRWGRIINVSSIAAVTGNRGQVNYSAAKGALHSATKSLAL 166 Query: 177 DLAQHGIRVVTIAPGLFLTPLLYKLPDEVQQSLAASIPFPKRLGKAEEYAQLALHIATNL 236 +LA GI V +APG+ T ++ + D+ +++ +P KR GK EE A L +A+ Sbjct: 167 ELASRGITVNAVAPGIIATGMIEEAFDD--KAIQNIVPM-KRAGKPEEVADLIGFLASPN 223 Query: 237 S--LNGEVIRLDGAL 249 + ++G++I ++G + Sbjct: 224 AAYISGQIISINGGM 238 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 94/208 (45%), Gaps = 18/208 (8%) Query: 3 LQGQAALVTGGASGLGAETVRQLVQAGARVSIL---DVNMEAA-QA-LADELRCHAVR-- 55 LQG+ AL+TG SG+G R L Q GA + + D N AA QA L + + Sbjct: 6 LQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQSTYHP 65 Query: 56 CDITDSASVQAALDAAQEANGAPRILINCAGIGGAKRMVGKDGSAMPLEDFSRIVNVNLI 115 D++ + A + A G+ IL+N AGI D P+E + I+ +NL Sbjct: 66 ADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVA-----DIEDFPVEKWDAIIAINLS 120 Query: 116 GTFNVIRLVAARMAAAEPLAEGERGVIVATASVAAFDGQVGQAGYAASKGGITAMTLPLA 175 F+ RL A + E G I+ AS G ++ Y A+K GI ++ A Sbjct: 121 SAFHTTRL------ALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTA 174 Query: 176 RDLAQHGIRVVTIAPGLFLTPLLYKLPD 203 + AQ G+ I PG LTPL+ K D Sbjct: 175 LENAQTGVTCNAICPGWVLTPLVQKQVD 202 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 446,180 Number of extensions: 16901 Number of successful extensions: 112 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 11 Length of query: 254 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 174 Effective length of database: 736,747 Effective search space: 128193978 Effective search space used: 128193978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)