BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3896.p
         (620 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093504|ref|YP_001098579.1| long-chain-fatty-acid--CoA liga...    65   8e-12

>gi|134093504|ref|YP_001098579.1| long-chain-fatty-acid--CoA ligase
           [Herminiimonas arsenicoxydans]
          Length = 560

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 118/274 (43%), Gaps = 30/274 (10%)

Query: 187 YADLEATRAGDEVERAYAATGPDTIVKFLFTSGSTKMPKAVINTQRMMCSN-LQMIVQTF 245
           + D+ A  A   ++R     GP  I    +T G+T   K  + T R + +N LQ     +
Sbjct: 185 FKDVLAQAAHMHLQRPL--LGPQDIAFLQYTGGTTGTAKGAMLTHRNIVANILQNEAWIW 242

Query: 246 PFLGEEPP----ILIDWLPWNHTFGANHNVGIVIYNGGTMYIDEGKPTPQGLATTLANLH 301
           P L +EPP      +  LP  H F       ++    G M I    P P+ + + +  L 
Sbjct: 243 PVLRKEPPDKTLNFVCALPLYHIFALTA-CCMLGTRLGVMNI--LIPNPRDIPSLVKELM 299

Query: 302 EISPTVYFNVPVGWEGIAHALEKDQALREKFYSRLRMQFYAGAALAQPVWDKLHATAEAT 361
           +       N+      + + L  +    +  +S L++    G A+ Q V D+       +
Sbjct: 300 KYK----INLLPAVNTLYNGLLNNPDFAKVDFSELKLCNGGGMAVQQVVNDRWRVVTGCS 355

Query: 362 CGERIVMCCGLGMTETSPSALF--VADLEVQAGQIGIPTPGMEIKLVPNGDKI------- 412
             E      G G++ETSP A    V   E  +G IG+P P  E+ ++ + D         
Sbjct: 356 IIE------GYGLSETSPVATSNPVETTEF-SGTIGLPVPSTEVMILDSNDNEVALGLSG 408

Query: 413 EIRYRGPNVTPGYWRAPEQTAEAFDEEGYFRSGD 446
           EI  RGP V  GYW  P +TA+A   +G+F++GD
Sbjct: 409 EIAIRGPQVMAGYWNNPAETAQAMTADGFFKTGD 442


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,269,888
Number of extensions: 55298
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 533
Effective length of database: 713,682
Effective search space: 380392506
Effective search space used: 380392506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)