BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3894.p
         (391 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [...    64   9e-12

>gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390
           [Herminiimonas arsenicoxydans]
          Length = 429

 Score = 64.3 bits (155), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 135/335 (40%), Gaps = 38/335 (11%)

Query: 3   FKKIALLALISATNALAAPLAQAEDTIKVGLIAAFSGPFADYGKQMEGGIKAYMAQ--HG 60
            K I     + A+  L  P       I++G+IA   G     G+    G++   A+    
Sbjct: 14  LKAIGAGVAVGASGFLGVPAFAQNKPIRIGIIAPRGGVAGTIGECGLRGVEWTTARINAA 73

Query: 61  DQVAGKKVQVIIKDTTGPSPEIAKRLAQELVVRDKVDFLAGFGLTPEALAVAPIAEQAKK 120
             + G+KV+++I++ T P   I +   ++LV+++KVD + G   +  +LA+AP AE ++ 
Sbjct: 74  GGIGGRKVELVIQEETSPKDTIDR--FRKLVLQEKVDCVQGIVSSGVSLALAPAAEDSRM 131

Query: 121 PMIIMNAASS----IITTKSNYIARFSMTLPQVSGPMATW----ALKNGIKRVVTLVADY 172
           P I  +  +         K  Y+  F  T  +    MA+       K   KR+  +  DY
Sbjct: 132 PTIFWDGTTQDGVKETMPKPKYV--FRSTDNECEAVMASLLAIKHFKGKFKRIACVNPDY 189

Query: 173 GPGIDAETAFKTNL--LGGGGEVVESIRVPLRNPEFAPYIQRIKDAKPQAVFIFVPAGEQ 230
             G +  TAF+  L   G   EVV      + N +    +  +K AKP  +F  +   + 
Sbjct: 190 SYGRNTWTAFQALLKKYGIEHEVVSEQWSKIGNLDLTSNVAALKAAKPDLIFSSLLFADL 249

Query: 231 SIAFMKGYRERGLAEAGIKVIATGDLTDDHVMPAMGDSTLGVITTF--------HYSAAH 282
            + FMK     GL E               V+PA G     +   F        H +   
Sbjct: 250 PV-FMKQAHNAGLTEG-----------TRFVLPAAGWQHTAMKKEFTPEGIVWGHNTMYF 297

Query: 283 DSPENKAFLKSFAAANPDAGR--PNFMAVAAYDGM 315
           D P+  A  K F     D  +  P++ A  AY  M
Sbjct: 298 DDPKASATQKEFVKWYADKYKDYPHWEADRAYFSM 332


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 720,285
Number of extensions: 30122
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 3
Length of query: 391
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 307
Effective length of database: 723,567
Effective search space: 222135069
Effective search space used: 222135069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)