BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3893.p (371 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 116 2e-27 gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 115 4e-27 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 103 1e-23 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 73 2e-14 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 122/410 (29%), Positives = 167/410 (40%), Gaps = 63/410 (15%) Query: 6 TLRAVALAAAACATYAGGTGAALAQSSVTIYGIIDTGVVYTTNANANGDSVFKMPSLTGT 65 T R + AA Y G A AQ+ VTIYGI D +VY++N ++ + +L G Sbjct: 2 TARNFVVLVAALTLYTGVLQNAGAQNGVTIYGIADVAMVYSSNQGGASNTYMRSGNLAG- 60 Query: 66 FPSRIGFKGTEDLGGGLQALFVLENGFAPDTGAMGQGNRLFGRQSYVGLKG-NWGQISLG 124 SRIGFKGTEDLGGG QA+F LE+GF DTG M + LF RQ++VG+ +G ++ G Sbjct: 61 --SRIGFKGTEDLGGGTQAIFQLESGFNLDTGEMSSSSTLFNRQAFVGINNTRYGALTAG 118 Query: 125 RQVNMTYLSQ----LKTDVLGPNIFAIGSIDNYLPNARSDNAIGYLGS-FSGFTLGATYS 179 RQ YL + G G ID RS+N+I Y ++G + A Sbjct: 119 RQYTPYYLFVGPIGPTNSLTGATGAHPGDIDGLDTTIRSNNSITYTSPVWNGLQVSALAG 178 Query: 180 FGRDAAGPAGPAATNCPGEVAGNSKACRQVTALLGYDGKGWGVTSSYDIL--YGNTGASN 237 F GE AG+ + R ++A + YD W Y L N G Sbjct: 179 F----------------GETAGDMGSGRTISAAIKYDINNWNFALGYQRLNNSNNPGGVW 222 Query: 238 GLTSSDNKDQRVTLNGY--------------FMIGDVKIGGGVVDRRTRAAANT----NT 279 +S N + NGY + +G V +G R N+ Sbjct: 223 SPNASANFNTSPVNNGYLSADSAQYLAGAARYTMGKVIVGANASRVEYRPNGNSLFTQKA 282 Query: 280 DSDLYYLGVSYPLSTALVLDAQVSRLDVK-----NSPNDVTLSVARLTYSLSKRTALYTS 334 D L Y ++ + S K + P TYS SKRTA+Y Sbjct: 283 TFDTLGLLTGYQMTPVFFVSVGYSYTKEKAANGISDPAKYHQLALEQTYSFSKRTAIYFL 342 Query: 335 LGYIKNSGTS----------AIAI---DAGGSVGAGKNQLGVMTGIRHTF 371 Y G + A+A+ G+ G NQ M GIRH+F Sbjct: 343 EAYQVAKGNTLGLGGSGPVRAVAVVGDSQNGTPSDGANQAVFMVGIRHSF 392 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 115 bits (288), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 129/388 (33%), Positives = 172/388 (44%), Gaps = 54/388 (13%) Query: 7 LRAVALAAAACATYAGGTGAALAQSSVTIYGIIDTGVV-YTTNANANGDSVFKMPSLTGT 65 ++ LA A +AG AA AQSSVT+YGI+D G+ T A AN D + + S + Sbjct: 1 MKKSLLALAVLGAFAG---AASAQSSVTVYGIVDMGITSQDTGAGAN-DRLNGVTSGNQS 56 Query: 66 FPSRIGFKGTEDLGGGLQALFVLENGFAPDTGAMGQ--GNRLFGRQSYVGLKGNWGQISL 123 SRIGFKGTEDLG GL+A FVLE A DTG + Q G F R + VGL GN+G ++L Sbjct: 57 -ASRIGFKGTEDLGNGLKANFVLEQTIAADTGVLSQVDGKTAFNRFATVGLSGNFGAVNL 115 Query: 124 GRQVNMTYLSQLKTDVLGPN--------IFAIGSIDNYLPNARSDNAIGYL-GSFSGFTL 174 GRQV+ + D G IF ++ N R N+I Y S+SGF Sbjct: 116 GRQVSAIKDAYDAIDPFGDGGTIAPISAIFFNAALKG--DNGRISNSIKYTSNSYSGFKF 173 Query: 175 GATYSFGRDAAGPAGPAATNCPGEVAGNSKACRQVTALLGYDGKGWGVTSSYDILYGNTG 234 GA Y+F GE AG + A LGY V Y +T Sbjct: 174 GAHYAF----------------GEQAGRTGADSNYGLNLGYANGPLNVQFGYMSGDDSTA 217 Query: 235 ASNGLTSSDN-KDQRVTLNGYFMIGDVKIGGGVVDRRTR-AAANTNTDSDLYYLGVSYPL 292 + G N KD+ L + G K+ D + + A N + Y LGVS + Sbjct: 218 GAPGFKPVKNSKDKMTFLGATYDFGVAKLHAAYGDSKNQPVAGNVDNKYRNYMLGVSAKV 277 Query: 293 STALVLDAQVSRLD------VKNSPNDVTLSVARLTYSLSKRTALYTSLGYI---KNSGT 343 A + A + D VK + D + + LSKRT LY + KN+ Sbjct: 278 GAAGSIMASYTVNDTRTFGGVKANDRDSKRAGIMYAHDLSKRTNLYAGYSHTSNDKNAKL 337 Query: 344 SAIAIDAGGSVGAGKNQLGVMTGIRHTF 371 +A+ D GS+ A G+RH F Sbjct: 338 NALVADQSGSMFA--------VGVRHKF 357 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 103 bits (258), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 104/363 (28%), Positives = 168/363 (46%), Gaps = 49/363 (13%) Query: 29 AQSSVTIYGIIDTGVVYTTNANANGDSVFKMPSLTGTFPSRIGFKGTEDLGGGLQALFVL 88 A SS+++YG ID+G+ + TN A+G S K+ S + +R+G KG E+LGGGL F L Sbjct: 30 APSSISMYGTIDSGIRHVTNTTASGGSTTKLGSNGEYYNNRLGIKGMENLGGGLNMHFHL 89 Query: 89 ENGFAPDTGAM-GQGNRLFGRQSYVGLKGNWGQISLGRQVNMTYLS-------QLKTDVL 140 E+GF TG + + NRLF R S +G+ G++G + GRQ ++ + Q + + Sbjct: 90 ESGFNTGTGELDNKANRLFNRISSIGIAGSFGSLDFGRQPSVACKAVYAYEPFQYRYVHI 149 Query: 141 GPNIFAI-GSIDNYLPN-------ARSDNAIGYLGSFSGFTLGATYSFGRDAAGPAGPAA 192 P A+ G++D + R N Y G F FT A Y Sbjct: 150 IPLAGAVAGNLDGRVSRPFGTVDGPRFSNGAQYFGKFGSFTASAEY-------------- 195 Query: 193 TNCPGEVAGNSKACRQVTALLGYDGKGWGVTSSYDILYGNTGASNGLTSSDNKDQ-RVTL 251 GEV G+++ L Y+ + V +Y N G + +SD ++Q + T Sbjct: 196 --IMGEVPGSNRNQAAKAVGLVYNDGTFTVGGAYTRQNPNIGT---VAASDYREQNQTTF 250 Query: 252 NGYFMIGDVKIGGGVVDRRTRAAANTNTDSDLYYLGVSYPLSTALVLDAQVSRLDVKNSP 311 G + I ++I GG + T A T+ ++ +LG Y + A L A R ++ + Sbjct: 251 GGGYKIDALRITGGYLKTTT---AITSQAKNI-WLGARYDFTPAASLTAGYYRTTLETAQ 306 Query: 312 NDV---TLSVARLTYSLSKRTALYTSLGYIKNSGTSAIAIDAGGSVGAGKNQLGVMTGIR 368 +++ L + TY+LS RT+LY + G +++ G+ Q G+ GI Sbjct: 307 SEIARRNLLIVGATYALSPRTSLYADIDQAVLHGLASLP------SGSQTRQTGISAGIS 360 Query: 369 HTF 371 H F Sbjct: 361 HIF 363 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 90/182 (49%), Gaps = 25/182 (13%) Query: 27 ALAQSSVTIYGIIDTGVVYTTNANANGDSVFK-MPSLTGTFPSRIGFKGTEDLGGGLQAL 85 ALAQSSV G +D + + +GD+ K + + +G S G KGTE+LGGGLQA Sbjct: 26 ALAQSSVQFVGTVD---AFAGSLKNSGDAGSKSVVNSSGMETSWWGVKGTENLGGGLQAQ 82 Query: 86 FVLENGFAPDTGAMGQ--GNRLFGRQSYVGLKGNWGQISLGRQVNMTYLSQLKTDVLGPN 143 F L + F PDTGA G+ + +F R ++VGL G++G++S+GR + ++ L G + Sbjct: 83 FALSSFFRPDTGAQGRFDSDTMFSRDAHVGLSGSFGRVSVGRDLAPNFIPTLTFSPFGGS 142 Query: 144 IFAIGSID-------------NYLPNARSD----NAIGY-LGSFSGFTLGATYSFGRDAA 185 FA ++ + P D N I Y + GFT + FG A Sbjct: 143 -FAFSPLELHTQTPSGSYRGQVWSPTVAGDTGWSNEIMYVMPKLGGFTTSLFFQFGEQAG 201 Query: 186 GP 187 P Sbjct: 202 KP 203 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 628,912 Number of extensions: 25712 Number of successful extensions: 91 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 4 Length of query: 371 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 288 Effective length of database: 726,862 Effective search space: 209336256 Effective search space used: 209336256 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)