BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3890.p
         (213 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095011|ref|YP_001100086.1| acetyl-CoA:acetoacetyl-CoA tran...   221   2e-59

>gi|134095011|ref|YP_001100086.1| acetyl-CoA:acetoacetyl-CoA
           transferase subunit beta [Herminiimonas arsenicoxydans]
          Length = 210

 Score =  221 bits (564), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 147/209 (70%), Gaps = 5/209 (2%)

Query: 9   IAARVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAPGEEDEDLI 68
           +AAR AQ++ +GAYVNLGIGLPT VAN++PAD  I+L SENG+LG+GP P   E D DLI
Sbjct: 1   MAARAAQELHDGAYVNLGIGLPTLVANFIPADIHIWLQSENGLLGIGPFPTEDEVDPDLI 60

Query: 69  NAGKQPVTLLTGGSYFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTGAPDAIPAV 128
           NAGKQ VT L G SYF  ADSF M+RGG +DI +LGA QVS +GDLANW       +  +
Sbjct: 61  NAGKQTVTALPGASYFSSADSFGMIRGGKIDIALLGAMQVSERGDLANWMIPG-KMVKGM 119

Query: 129 GGAMDLAIGAKQVFVMMDHQTKTGES----KLVEACSYPLTGIACVNRIYTDLAVIDVTP 184
           GGAMDL  G K++ V+M+H  +  +     K++ +C  PLTG+  V+RI TDL VID+TP
Sbjct: 120 GGAMDLVAGVKRIVVLMEHVARAKDGSISHKILSSCDLPLTGVGVVDRIITDLGVIDITP 179

Query: 185 QGLQVREIVEGLSFEELQKLTGAPLRPAA 213
           +GL++ E+  G++ EE+   TG PL  +A
Sbjct: 180 KGLRLIELAPGVTKEEVVANTGVPLDVSA 208


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 445,022
Number of extensions: 20015
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 135
Effective length of database: 743,337
Effective search space: 100350495
Effective search space used: 100350495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)