BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3889.p
         (400 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093830|ref|YP_001098905.1| acetyl-CoA acetyltransferase [H...   299   2e-82
gi|134095996|ref|YP_001101071.1| acetyl-CoA acetyltransferase [H...   296   1e-81

>gi|134093830|ref|YP_001098905.1| acetyl-CoA acetyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 391

 Score =  299 bits (766), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 175/401 (43%), Positives = 252/401 (62%), Gaps = 12/401 (2%)

Query: 1   MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIFGCANQA 60
           M+++ I  A RT +G++GGAL  + A DLGA  +R L+ R   +   A+ +VI G    A
Sbjct: 1   MEEIVIVAAGRTAVGKFGGALAKIPAADLGAHIIRNLLLRT-GIAADAISEVILGQVLTA 59

Query: 61  GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM 120
           G   +N AR + +  GLP  VP  TIN++CGSG+ A   AA+AI+ G+  ++IAGG E+M
Sbjct: 60  G-CGQNPARQASIRGGLPDMVPAFTINKVCGSGLKATHLAAQAIQCGDAHIIIAGGQENM 118

Query: 121 TRAPFVMGKADSAFSR-QAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRQ 179
           + +P V+  +          + DT I    ++ L    Y    M  TAEN+A  F +SRQ
Sbjct: 119 SASPHVLQNSREGIRMGDGKLVDTMI----IDGLW-DVYNQYHMGTTAENIAKKFGISRQ 173

Query: 180 DQDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPR-ATSMEALARLK 238
           +QD+FA+ SQ KA AAQ  G    EI+P+ IP KKG  + V  DE+ +  T++E+LA L+
Sbjct: 174 EQDEFALASQHKAEAAQNAGKFKDEIIPLEIPGKKG-AVIVDSDEYIKPGTTLESLAALR 232

Query: 239 GVVKPDGTVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGP 298
                DGTVTAGNASG+NDGA A+++ +A+   +  LKP ARI   ++AGV P IMGMGP
Sbjct: 233 PAFSKDGTVTAGNASGINDGAAAVIMMTAKKAAELGLKPLARIKAYSSAGVDPAIMGMGP 292

Query: 299 APASKKVLAQLGMSIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPL 358
            PA++  L + G S   +D++E+NEAFA+Q +AV RE+G   D  ++N NGGAIA+GHP+
Sbjct: 293 VPAAQLCLKKAGWSHQDIDLMEINEAFAAQAIAVNREMGW--DTGKINVNGGAIAIGHPI 350

Query: 359 GMSGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIER 399
           G SG R++ T  +++ R   R  L ++CIG G G+A+ IER
Sbjct: 351 GASGCRILVTLLHEMMRRDARRGLASLCIGGGMGVALAIER 391


>gi|134095996|ref|YP_001101071.1| acetyl-CoA acetyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 398

 Score =  296 bits (757), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 182/411 (44%), Positives = 241/411 (58%), Gaps = 28/411 (6%)

Query: 1   MKDVFICDAIRTPIGRYG-GALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIFGCANQ 59
           ++D +I  A RTPIG+   G  ++ R DDL    L++++ + P +D   ++D I GC+  
Sbjct: 5   LQDAYIVAATRTPIGKAPRGMFRNTRPDDLLVRVLQSVLSQVPDLDPNLIEDAIIGCSFP 64

Query: 60  AGEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVES 119
             E   N+ARM +LLAGLP+ V G T+NR C SG+ A+  AA  I+ GE  +MIAGG ES
Sbjct: 65  EAEQGLNMARMGVLLAGLPKTVGGVTVNRYCASGLTAIAMAADRIRVGEADVMIAGGAES 124

Query: 120 MTRAPFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRQ 179
           M+  P +MG   +        +D  IG           YG   M  TAE VA  +KVSR+
Sbjct: 125 MSMVP-MMGHHPAM--NMGIFKDENIG---------MAYG---MGLTAERVAEQWKVSRE 169

Query: 180 DQDQFAVRSQAKAAAAQANGTLAQEIVPVVI----PQKKGDPITVT-----QDEHPRA-T 229
            QDQFA+ S  KA AAQ +G    E+  V I    P      I +T      DE  RA T
Sbjct: 170 AQDQFALNSHLKALAAQQSGEFNNEMTSVDIVERFPNLSSGEIDITTRMVNMDEGARADT 229

Query: 230 SMEALARLKGVVKPDGTVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGV 289
           S+EALA+L+ V  P G+VTAGN+S  +DGA AL+L S + + ++ L P AR +  A  GV
Sbjct: 230 SLEALAKLRPVFAPKGSVTAGNSSQTSDGAGALILVSEKILRQFNLTPLARFVSFAVRGV 289

Query: 290 APRIMGMGPAPASKKVLAQLGMSIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNG 349
            P IMG+GP  A    L   G+  DQMD IELNEAFA+Q LAV+++LG+  D ARVNP G
Sbjct: 290 PPEIMGIGPKEAIPAALRAAGLKQDQMDWIELNEAFAAQALAVIQDLGL--DPARVNPVG 347

Query: 350 GAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIERV 400
           GAIALGHPLG +GA    T  + L R   +Y + TMC+G G G A + ER+
Sbjct: 348 GAIALGHPLGATGAIRSATVVHALRRKNMKYGMVTMCVGTGMGAAGIFERM 398


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 731,509
Number of extensions: 29286
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 400
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 316
Effective length of database: 723,567
Effective search space: 228647172
Effective search space used: 228647172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)