BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3886.p (257 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 169 2e-43 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 164 3e-42 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 151 4e-38 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 129 2e-31 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 117 6e-28 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 169 bits (427), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 147/257 (57%), Gaps = 6/257 (2%) Query: 5 SSTADTTLRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGGFAPS 64 ++ T L+T++++ +G +AN +VS G H++IGPNGAGK+TFIN ++G + P+ Sbjct: 341 TAAGTTCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPT 400 Query: 65 SGKVWFGGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLAIQE--RRGL---QY 119 SG + F G+ TA H+ + G+ RTFQ LF +T LE+V++ R GL Sbjct: 401 SGSIEFMGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLL 460 Query: 120 KWYQTVASQSEVVDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLLLD 179 + + EA LL + L+ A R+L +G QR +EIA ALA PK+LLLD Sbjct: 461 RLPSYFHDERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLD 520 Query: 180 EPAAGIPAAESRELFEVIAQL-PRDVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPA 238 EPAAG+ E +L ++I L +T++ +EH + ++ ++ +TVL GKV+ GT A Sbjct: 521 EPAAGLTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVA 580 Query: 239 EIAADQRVKEVYLGEAE 255 E+ ++ V E Y G E Sbjct: 581 EVRSNPAVIEAYFGTGE 597 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 164 bits (416), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 104/258 (40%), Positives = 147/258 (56%), Gaps = 7/258 (2%) Query: 1 MNPTSSTADTTLRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGG 60 M P S L N+SKR+G A ++V++ G + LIGPNGAGKTTF N++TG Sbjct: 1 MTPILSP-QIILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGL 59 Query: 61 FAPSSGKVWFGGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLA--IQERRGLQ 118 + SG G+ + A H K G+ RTFQ LF +T LE+V++ ++ +GL Sbjct: 60 YQADSGSFELAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLF 119 Query: 119 YKWYQTVASQSE---VVDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKV 175 + A++ E + AM LL + + Q A R L+YG QR +EIA ALAT P++ Sbjct: 120 GAVFHHKAARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQL 179 Query: 176 LLLDEPAAGIPAAESRELFEVIAQLPRD-VTIVFIEHDMGLVFRFAERITVLVGGKVLVE 234 L LDEPAAG+ A E L E++ ++ + TI+ IEHD+ LV +RITVL GK + E Sbjct: 180 LALDEPAAGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAE 239 Query: 235 GTPAEIAADQRVKEVYLG 252 G PA++ + V E YLG Sbjct: 240 GVPADVQKNPAVIEAYLG 257 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 151 bits (381), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 143/254 (56%), Gaps = 3/254 (1%) Query: 6 STADTTLRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSS 65 ST D L+ + +S+ +G F+A V L+ + G +++GPNGAGKTT +N+LTG P++ Sbjct: 2 STNDVLLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTT 61 Query: 66 GKVWFGGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTV 125 G V F G +I + + RG+ R FQ+ ++F LTV E++ ++ +++ + ++ Sbjct: 62 GNVHFNGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNMRWNGFGSL 121 Query: 126 ASQSEVVDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLLLDEPAAGI 185 +V D + + L ++ SL +G+++L+++A A A PKV+LLDEP AG+ Sbjct: 122 FGSRKVNDIVVRTADAFGLAPWLDTKGSSLPHGRRKLLDVASAFALHPKVMLLDEPTAGV 181 Query: 186 PAAESRELFEVIAQLPRDV---TIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAA 242 A+ + E + + + + I+ +EHDM LV R++ RI + GK + + E A Sbjct: 182 STADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIADLPRDEFFA 241 Query: 243 DQRVKEVYLGEAEH 256 ++ + + +G+ H Sbjct: 242 NEEIISIVVGKGAH 255 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 129 bits (323), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 143/261 (54%), Gaps = 10/261 (3%) Query: 5 SSTADTTLRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGGFAPS 64 SSTA + + +L+ R+G A +++L G L+GPNG+GKTTF N+LTG + S Sbjct: 16 SSTATSLVSARDLTMRFGGLTALDQLNLHIVEGEVLGLLGPNGSGKTTFFNVLTGLYKAS 75 Query: 65 SGKVWFGGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLAIQE--RRGLQYKWY 122 SG + + G ++ E + G+ RTFQ + L LTV +++V+ + + GL + + Sbjct: 76 SGSIIYQGREVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMQHGLFFNLF 135 Query: 123 QTVASQSEVVD-----EAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLL 177 + A ++E EA+ + S L + + +R +E+ AL + P++LL Sbjct: 136 RRKAFRAEYDAYVAKVEALLHIFSPPLVARMFEPVETFSMIDRRRIEVCRALLSEPRLLL 195 Query: 178 LDEPAAGIPAAESRELFEVIAQLPR---DVTIVFIEHDMGLVFRFAERITVLVGGKVLVE 234 LDEP+AG+ E+ L + I Q+ ++T+V IEH+M ++ R +R V GK + E Sbjct: 196 LDEPSAGMTHDETEALMDDILQVRNKLSNLTVVLIEHEMNVIKRITDRCIVFNYGKKIAE 255 Query: 235 GTPAEIAADQRVKEVYLGEAE 255 GT AEI AD V+ YLGE E Sbjct: 256 GTYAEITADPNVQTAYLGEDE 276 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 117 bits (293), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 132/242 (54%), Gaps = 11/242 (4%) Query: 11 TLRTENLSKRWGSFVANSEVSLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSSGKVWF 70 ++ +N++K++G+FVA ++VSL F G AL+GP+G GKTT + ++ G P G+V Sbjct: 2 SIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 71 GGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVASQSE 130 GED A A+H R +R + FQ LF +TV E++ GL+ + T S+S Sbjct: 62 DGED--ASARHVR-ERQVGFVFQHYALFKHMTVFENIAF------GLRVRPAATRPSESV 112 Query: 131 VVDEAMALLASLRLEQEANSITRSLAYGKQRLVEIALALATRPKVLLLDEPAAGIPAAES 190 + ++ LL ++L+ A+ L+ G+++ + +A ALA P+VLLLDEP + A Sbjct: 113 IKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVR 172 Query: 191 RELFEVIAQLPRD--VTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADQRVKE 248 +EL + +L + VT +F+ HD A++I ++ G V G P ++ + Sbjct: 173 KELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPF 232 Query: 249 VY 250 VY Sbjct: 233 VY 234 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 465,445 Number of extensions: 18976 Number of successful extensions: 236 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 42 Length of query: 257 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 177 Effective length of database: 736,747 Effective search space: 130404219 Effective search space used: 130404219 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)