BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3885.p (233 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 154 4e-39 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 144 3e-36 gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 142 1e-35 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 129 9e-32 gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC t... 111 4e-26 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 154 bits (389), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 136/229 (59%), Gaps = 17/229 (7%) Query: 5 LALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGSIRWR 64 L++ +T GY + VL DVS + G+ +LG NG GK++L+ +++GLT G I W Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 65 GGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLT-----------VVERGGKWDLKK 113 G ++ TH +G+ +P+ R +FP +SV E+L V ER L + Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRER-----LAR 118 Query: 114 IYEIFPRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKV 173 +YEIFPRL ER + +SGGEQ M++I R LM P +L++DEP GL+P+ V+E V Sbjct: 119 VYEIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNV 178 Query: 174 IRRLVSDEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLAD 222 IRR ++ G++V++VEQ+AR L+++ VL +GR++ ++ L ++ Sbjct: 179 IRR-INALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASN 226 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 144 bits (364), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 132/228 (57%), Gaps = 10/228 (4%) Query: 4 LLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGSIRW 63 LL ++ + YG +S + EGE + ++G NG GK+S L + G+ + GSI Sbjct: 5 LLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASGSITL 64 Query: 64 RGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTV-----VERGG----KWDLKKI 114 G + + +H+ H G+ VP+ RF+F SVE++L + +R G + D+ ++ Sbjct: 65 GGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDDIDRM 124 Query: 115 YEIFPRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVI 174 +++FPRL ERR LSGGEQQML IAR LM P +LL+DE GLAP I+ L V+ Sbjct: 125 FQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFLFPVL 184 Query: 175 RRLVSDEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLAD 222 L + +G+S+++VEQ A AL++T RA V++ G + + S L+ D Sbjct: 185 VDL-NRQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKD 231 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 142 bits (359), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 135/228 (59%), Gaps = 11/228 (4%) Query: 4 LLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGL---TRMHGGS 60 +L + + YG ++ + + +GE + L+G NG GKT+ L + G R+ G Sbjct: 5 VLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRVDG-H 63 Query: 61 IRWRGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTV--VERGGKW----DLKKI 114 I + G I + + + L VP+ R +F +S++E+L + R K D++K Sbjct: 64 IEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGIADDMEKW 123 Query: 115 YEIFPRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVI 174 + +FPRL ER M LSGGEQQMLA+ARALM P +LLLDEP GL+PI+V+++ +VI Sbjct: 124 FAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKIFEVI 183 Query: 175 RRLVSDEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLAD 222 R V+ +G+++++VEQ+AR+AL RA V++ G I D+Q +L D Sbjct: 184 RS-VAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLND 230 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 129 bits (325), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 125/234 (53%), Gaps = 14/234 (5%) Query: 1 MPELLALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGS 60 M L + + YG V+ DV+ + GE + LLG NG GKT+ ++GL G Sbjct: 1 MSSKLIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGR 60 Query: 61 IRWRGGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVV---ERGGKWDLKKIYEI 117 I G DI R P HKRA GL ++PQE +F LSVE+++ V +R L K +I Sbjct: 61 IELDGVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSK-EQI 119 Query: 118 FPRL---------HERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQ 168 RL + R N LSGGE++ + IARAL +P +LLDEP G+ PI V Sbjct: 120 EQRLDTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVI 179 Query: 169 ELLKVIRRLVSDEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLAD 222 E+ +++ R + + G+ V++ + + R L + RA ++++G ++ + ++AD Sbjct: 180 EIQRIV-RFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIAD 232 >gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 111 bits (277), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 124/213 (58%), Gaps = 7/213 (3%) Query: 5 LALDKVTAGYGESIVLEDVSFVMHEGESLALLGRNGVGKTSLLITLMGLTRMHGGSIRWR 64 LAL+ V + VL D+S + GE + L+GRNG GK++ ++MG + G+I+W+ Sbjct: 3 LALENVNVILAGNPVLRDISMHIEPGELVCLVGRNGAGKSTTFRSIMGFQPLKSGAIKWK 62 Query: 65 GGDIVRVPTHKRAHAGLGWVPQERFMFPSLSVEEHL---TVVERGGKWDLKKI---YEIF 118 I + THK GLG+ P+ +F L+VE+++ T + G+ ++I Y +F Sbjct: 63 RSAINGMQTHKIVELGLGYTPEGSDVFGDLTVEDNIALPTWTRKSGRSAQERIDEAYAVF 122 Query: 119 PRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLV 178 P+L + H G QLSGGE++M++IARAL + P +LLLDE EGL+P I+ + + ++ ++ Sbjct: 123 PKLKQYLHRGGQQLSGGERKMVSIARALALDPELLLLDEAFEGLSPAIIPTISEGLQSIL 182 Query: 179 SDEGMSVIVVEQHARMALSLTQRAIVLDRGRIV 211 +G V++ E + R V++RG IV Sbjct: 183 K-QGRGVLLAESNFYHLPPFADRLYVIERGEIV 214 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 448,554 Number of extensions: 18291 Number of successful extensions: 189 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 42 Length of query: 233 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 154 Effective length of database: 740,042 Effective search space: 113966468 Effective search space used: 113966468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)