BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3884.p
         (314 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093902|ref|YP_001098977.1| putative flavohemoprotein [Herm...    67   8e-13

>gi|134093902|ref|YP_001098977.1| putative flavohemoprotein
           [Herminiimonas arsenicoxydans]
          Length = 397

 Score = 67.4 bits (163), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 117/241 (48%), Gaps = 25/241 (10%)

Query: 1   MNVIIDSITQDTADIRVFLLKSADGSPLPTYKAGAHIDLT--LGNGL--VRQYSLCCRNP 56
            N+ + ++ +++A +  + + + D   LP ++ G ++ +   L +GL  +RQYSL   +P
Sbjct: 152 FNMRVVAVEKESAQVTSYSMVAVDRQ-LPEFQPGQYVSVAVFLPDGLRQLRQYSLS-ESP 209

Query: 57  SGENYRIAVKRE-----TNSRGGSSWLHEHAHPGTPLQAGIPRSAFGL-TDAPGPHLLLA 110
             ++ RI+VKRE     T +   S+WLH++   G+ L   +P   F   TD   P +LL+
Sbjct: 210 DHQHLRISVKREVAGAETPAGVVSNWLHDNVVVGSILPVSMPAGDFTPDTDGEDPIVLLS 269

Query: 111 GGIGITPLLAMA--YALLADGRAFTLTCFARDESMLPLRNELHEGPLA---IHTRIFCGL 165
            G+GITP+++     A ++  R       AR+    P R ++ +   +   +H+  F   
Sbjct: 270 AGVGITPMISALNRIAKVSPRRRVIFAHAARNAHHHPHRADIAKAVASMPNLHSVTFYEE 329

Query: 166 DEVATRTGIAEVMAAH-------AQAQVYTCGPPAFMVA-VGELASARYGADHFHQESFQ 217
            E    T +A  M           ++QVY CGP  FM A   +L +    A H H+E F 
Sbjct: 330 AEHDDETSLAGRMELQKLPQWDVKKSQVYMCGPLPFMQAQWADLLAQGVPAQHLHREVFG 389

Query: 218 P 218
           P
Sbjct: 390 P 390


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 622,887
Number of extensions: 26488
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 232
Effective length of database: 730,157
Effective search space: 169396424
Effective search space used: 169396424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)