BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3878.p
         (318 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093902|ref|YP_001098977.1| putative flavohemoprotein [Herm...    68   7e-13

>gi|134093902|ref|YP_001098977.1| putative flavohemoprotein
           [Herminiimonas arsenicoxydans]
          Length = 397

 Score = 67.8 bits (164), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 24/240 (10%)

Query: 4   LQVKVAARREEAQDIVALELVAADGQPLPPFTAGAHIDV--HLPGGL--VRQYSLCNAPH 59
             ++V A  +E+  + +  +VA D Q LP F  G ++ V   LP GL  +RQYSL  +P 
Sbjct: 152 FNMRVVAVEKESAQVTSYSMVAVDRQ-LPEFQPGQYVSVAVFLPDGLRQLRQYSLSESPD 210

Query: 60  EQHRYQIGVLRD---ANSRGGSVA--VHEALQVGELITISAPRNQFALHSARHS--LLLA 112
            QH  +I V R+   A +  G V+  +H+ + VG ++ +S P   F   +      +LL+
Sbjct: 211 HQH-LRISVKREVAGAETPAGVVSNWLHDNVVVGSILPVSMPAGDFTPDTDGEDPIVLLS 269

Query: 113 GGIGITPILCMAEALAAEGASFEMHYCARSPARQAFRER--IAACGFADRVVH------- 163
            G+GITP++     +A       + +   +        R  IA    +   +H       
Sbjct: 270 AGVGITPMISALNRIAKVSPRRRVIFAHAARNAHHHPHRADIAKAVASMPNLHSVTFYEE 329

Query: 164 --HYDDGAAAQKLDLAALLARVDPATHLYVCGPTGFIAHVVDTARARGWPDSQVHYEYFG 221
             H D+ + A +++L  L       + +Y+CGP  F+        A+G P   +H E FG
Sbjct: 330 AEHDDETSLAGRMELQKLPQWDVKKSQVYMCGPLPFMQAQWADLLAQGVPAQHLHREVFG 389


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 576,979
Number of extensions: 22724
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 236
Effective length of database: 730,157
Effective search space: 172317052
Effective search space used: 172317052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)