BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3877.p
         (395 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093984|ref|YP_001099059.1| putative amino acid ABC transpo...    64   2e-11

>gi|134093984|ref|YP_001099059.1| putative amino acid ABC
           transporter [Herminiimonas arsenicoxydans]
          Length = 381

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 151/359 (42%), Gaps = 31/359 (8%)

Query: 35  VKVGLIVPMSGPFASTGRQIEAAVKLYQQKY---GESVAGRKVEI-LLKDDGGVSPDVTK 90
           +K+G + P++G  A  G+  E   ++  +     G ++ G+KV+  LL +D    P    
Sbjct: 29  IKIGSVAPITGTDAHMGKDNENGARMAVEDLNAKGTTIGGKKVKFQLLAEDDASDPKQAT 88

Query: 91  RLAQELVARDKAQV-LMGFGLTPLALAAAPIATQAKVPMIVTAAATSIIPQRSPFIVRTG 149
             AQ+LV  D   V ++G   +   + A+ I   A +P +  +A     P+ +    +T 
Sbjct: 89  AAAQKLV--DAGVVAVIGHLNSGTTIPASRIYANAGIPQVSPSATN---PKYTQQGFKTA 143

Query: 150 FTL----AQVTAPLASWAAKNGIKSVVTFVSD---YGPGLDAEKVFVKNFSEAGGKVMES 202
           F +    AQ+   L  +A K      V  + D   YG G+  E  F K    AGG ++ S
Sbjct: 144 FRVVANDAQLGQVLGQYAVKTLGGKSVAVIDDRTAYGQGVADE--FAKGVKAAGGSIVAS 201

Query: 203 VRVPLRNPDYAPFLQRVKDAKPEALFVFVPSGEGAAVLKQFTERGLGAA--GIRLICTGD 260
                +  D+   L  +K  KP+ +F       G  +L+Q  + G+ A   G   ICTG 
Sbjct: 202 QYTNNKATDFNSILTSIKAKKPDIIFFGGMDAVGGPMLRQMKQLGINAKFMGGDGICTGS 261

Query: 261 VLDDDLMAGIGAAAKDVVSSHHYSAAHPSAANK--EYVESIAKANKGMRANFHSVGAYDG 318
           +     +AG       VV +   +   P A  K  E   +  K   G+   + +  AYD 
Sbjct: 262 LPG---LAGTALGDNQVVCAE--AGGVPEARRKGVEDFRASYKKRFGVEVVYTAAYAYDA 316

Query: 319 MHLLYESLKKTGGDADGGKLLAVMKGMSWESVRGPVTIDAA--TRDIVQTVYMRKAELR 375
            + + E++KK     +  K L  +   ++  + G +  DA    +D   T+Y  +   R
Sbjct: 317 TNAVVEAMKKA-NSWEPAKYLPELAKSNYPGITGTIAFDAKGDIKDGTLTLYTFRGGKR 374


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 652,308
Number of extensions: 24784
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 3
Length of query: 395
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 311
Effective length of database: 723,567
Effective search space: 225029337
Effective search space used: 225029337
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)