BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3876.p
         (298 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096571|ref|YP_001101646.1| LysR family transcriptional reg...   160   5e-41

>gi|134096571|ref|YP_001101646.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 319

 Score =  160 bits (406), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 159/304 (52%), Gaps = 16/304 (5%)

Query: 8   LDLNLLVTLDALLIEHNVTRAAERLHLAQPTVSLQLARLRDFFGDPLLLPGPRGMRTTAR 67
           LDLNLL   DA++ E N+TRAA  L + QP VS  L RLRD  GD L++    G++ T+R
Sbjct: 6   LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGVKPTSR 65

Query: 68  AEELREPLQQALAALAQAVTPSTAFDPAQSQQTWRAAAFDYSEYTILMPALDTLRKAAPA 127
           A EL   +++AL+ L  AVTP T FD +++  T+R A  D +    L   +  + K AP 
Sbjct: 66  ATELWPVVRRALSDLETAVTPDT-FDVSRATTTFRMAMADATAALWLPFLVRAIEKEAPG 124

Query: 128 TRLAVIQTTPSLVARKAEQGEIDLAF-----------LTATEAPPELRRLPLFTERYVLA 176
             + ++  T         +G+IDLA                 A  ++R   L+T  YV  
Sbjct: 125 LNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGEYVCV 184

Query: 177 GRAGHPQLKRRPTLAQFCKLEHVIVSTDGGGFHGVTDTVLAEMGMTRKVALSVPHFLFLT 236
            R  HP  K   TL  +C   H++VS  G    G+ D  L+E+G  R++ L+V  F    
Sbjct: 185 MRKNHPLAKEELTLDTYCAAHHLLVSFSGRA-KGLMDDALSEVGRERRILLTVNQFFTAG 243

Query: 237 AVLANTDLVAMLPSRLVRGNAV---LKVVEAPIEVPGFEMFMLWHERVHRDPAHQWLREH 293
            V+A++DL+ +LP  L+    +   L   + P  +P   + MLWHER  R+PAH+WLRE 
Sbjct: 244 RVVASSDLITVLPRHLIASTGMEEALIAKDLPFSLPEVHVDMLWHERDARNPAHKWLREQ 303

Query: 294 IASA 297
           + ++
Sbjct: 304 LITS 307


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 522,210
Number of extensions: 19800
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 217
Effective length of database: 733,452
Effective search space: 159159084
Effective search space used: 159159084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)