BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3861.p
         (159 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory p...   129   1e-31
gi|134093985|ref|YP_001099060.1| putative transcriptional regula...    92   1e-20
gi|134096351|ref|YP_001101426.1| high-affinity branched-chain am...    91   2e-20

>gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory
           protein [Herminiimonas arsenicoxydans]
          Length = 155

 Score =  129 bits (323), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 92/152 (60%)

Query: 2   ELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLL 61
           + D  D  +L  LQ    +SN+EL+ R+NLSP     RV+RLE EG+I  Y AL D   L
Sbjct: 3   KFDRYDRILLETLQSKGRVSNVELSERVNLSPPQCYRRVQRLEQEGVIRGYAALVDAAAL 62

Query: 62  GLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHF 121
           GL V  FV + + R+  + + + E A+  F E++E Y ++GD DYLL++V  DL +L  F
Sbjct: 63  GLGVTAFVNLNIAREQFKQVRELEQAIRQFPEILECYTISGDFDYLLKVVATDLKSLSSF 122

Query: 122 IVDHLTKIPGIKNIRSSFALKQIKYKTALPTP 153
           + D L ++PG+  +RS   L++IK  + LP P
Sbjct: 123 LTDRLMQVPGVAGVRSMVCLEEIKPASPLPLP 154


>gi|134093985|ref|YP_001099060.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 169

 Score = 92.0 bits (227), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 84/146 (57%)

Query: 3   LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62
           LD  D ++LN+LQ+++ I    LA ++++S    L R++ +   GIIS  VA+ DP  LG
Sbjct: 7   LDKVDRKLLNLLQKDNQIPTRILADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFALG 66

Query: 63  LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122
             +  F++V L  Q  E + +FET ++   EVM+ Y ++GD DY L + V D+     F+
Sbjct: 67  YGMLAFLEVSLANQSDEHMLEFETRMNREPEVMQCYFVSGDYDYFLVVHVVDMDAYYQFV 126

Query: 123 VDHLTKIPGIKNIRSSFALKQIKYKT 148
              ++    +++ +S F +K+ K+ T
Sbjct: 127 RRAISGSGNVRHFQSRFPMKRAKFDT 152


>gi|134096351|ref|YP_001101426.1| high-affinity branched-chain amino
           acid transport system; global regulatory protein, Leu
           responsive; site-specific blocking of 549 methylation
           [Herminiimonas arsenicoxydans]
          Length = 157

 Score = 91.3 bits (225), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 81/146 (55%)

Query: 3   LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62
           LD  D RILN LQ +SS +N +LA  ++ SP   L RVKRL   G+I R VA+  P  +G
Sbjct: 8   LDELDRRILNALQGDSSQTNNDLALAVHASPPTCLRRVKRLVDAGVIERQVAIVSPQKIG 67

Query: 63  LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122
             +   V++ L+ Q AE   +FET V+    V++ Y ++   D++L I V D+      +
Sbjct: 68  AGLTAIVEITLDNQAAERQVEFETVVAGESAVLQCYRVSPGPDFVLVIQVADMPAYNALV 127

Query: 123 VDHLTKIPGIKNIRSSFALKQIKYKT 148
                    ++N++S F++ + K++T
Sbjct: 128 HRLFASHANVRNVKSFFSIHRSKFET 153


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 260,436
Number of extensions: 9146
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 3
Length of query: 159
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 84
Effective length of database: 753,222
Effective search space: 63270648
Effective search space used: 63270648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)