BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3860.p
         (893 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093992|ref|YP_001099067.1| pyruvate dehydrogenase subunit ...   939   0.0  

>gi|134093992|ref|YP_001099067.1| pyruvate dehydrogenase subunit E1
           [Herminiimonas arsenicoxydans]
          Length = 898

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/859 (53%), Positives = 612/859 (71%), Gaps = 17/859 (1%)

Query: 14  DIDAQETQEWLQALQSVLAEAGPERARFLLSRLSAAAQQWGVNWRDARNTPYLNTIRPAQ 73
           D D  ETQEWL AL++V+   GP+RA +L+ RL   A++ G     +  T Y+NTI    
Sbjct: 15  DPDVMETQEWLDALEAVIENEGPDRAHYLMERLIDLARRRGAQIPFSSTTAYVNTIPADL 74

Query: 74  EPPFPGGSDAQAIEERIASIMRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHF 133
               PG  +    EER+ S MRWNA+AMVV+ANR  G+LGGHI+S+AS A++   GFNHF
Sbjct: 75  GENSPGNLE---YEERLRSWMRWNAMAMVVKANRVDGDLGGHISSFASLANMLGTGFNHF 131

Query: 134 FRARDDKFAGDVVYFQPHSAPGIYARAFLEGALSEDDLAYYRREIEAKRVGRQGLSSYPH 193
           + A  +   GD++Y Q HS+PG+YARAFLEG LSE+ L  +RRE++       GLSSYPH
Sbjct: 132 WHAPTEDHGGDLLYIQGHSSPGVYARAFLEGRLSEEQLINFRREVDG-----HGLSSYPH 186

Query: 194 PWLMPHFWQFPTGSMGIGPINAIYQARFLRYMEHRGLLQDQGRKVWGVFGDGEMDEPESL 253
           P LMP FWQFPT SMG+GP+ AIYQARFL+Y++ R + +   RKVW   GDGEMDE ES+
Sbjct: 187 PKLMPDFWQFPTVSMGLGPLMAIYQARFLKYLQAREIAKTDNRKVWVFCGDGEMDEVESM 246

Query: 254 AALSLASREKLDNLIFVVNCNLQRLDGPVRGNGHIVDELETLFAGAGWNVIKLLWGSDWD 313
            A+ +A RE+LDNL+ VVNCNLQRLDGPVRGNG I+ ELE  F GAGWNVIK++WGS+WD
Sbjct: 247 GAIGVAGREQLDNLVMVVNCNLQRLDGPVRGNGKIIQELEGEFRGAGWNVIKIIWGSNWD 306

Query: 314 GLFARDQDGELVDALNRTVDGQLQTFAANDGAFNRQHFFGQTPGTRAIGATLTDEEINRL 373
            L A+D+DG L   +  T+DG+ Q + A DGA+ R++FFG+ P    + + ++D+++  L
Sbjct: 307 PLLAKDKDGILQRVMMETLDGEYQNYKAKDGAYVRKNFFGKHPKLLEMVSRMSDDDLWHL 366

Query: 374 RRGGHDMKKIFSAYQAAAQHRGQPTVILAQTKKGYGMGAAGEGKMTTHQQKKLDEESLLQ 433
            RGGHD  K+++ ++ A +H+GQPTV+L +T KGYGMG +GE + T HQ KKLD+E++ +
Sbjct: 367 LRGGHDPHKVYAGFKQAQEHKGQPTVLLVKTVKGYGMGKSGEARNTAHQTKKLDDEAVRE 426

Query: 434 FRDRFKLPLSDEQCRALAFYKPAADSAEMKHLHARRAALGGYMP-RRQGGDARRAVPPLE 492
            RDRF LP++DE    + F+KPA D+ EMK+LH RRAALGGY+P RRQ  D +  VP L 
Sbjct: 427 MRDRFNLPIADEHLADIPFFKPADDAPEMKYLHERRAALGGYLPQRRQQADEKLPVPELA 486

Query: 493 A-HSQFALQADGKEMSSTMALVRQLGNLLKDPEFGRYVVPIVADEARTFGMANLFRQVGI 551
           A  +     A+G+E+S+T A VR +  LL+D   G+ +VPI+ DE+RTFGM  LFRQ+GI
Sbjct: 487 AFKAVLDPTAEGREISTTQAYVRIISILLRDASLGKRLVPILVDESRTFGMEGLFRQIGI 546

Query: 552 YSSQGQLYEPEDIGSILYYREAKDGQILEEGITEAGAISSWTAAATAYSVHGTPMLPFYI 611
           Y+ +GQLYEP D   + YYRE K GQIL+EGI EAGA++SW AAAT+YS +   M+PFY 
Sbjct: 547 YNREGQLYEPVDKDQVSYYREDKAGQILQEGINEAGAMASWIAAATSYSTNNRIMVPFYT 606

Query: 612 YYSMFGFQRIGDLIWAAADQRARGFLIGATSGRTTLGGEGLQHQDGNSLVTAASIPNCVS 671
           +YSMFG QRIGDL WAA D RARGFL+G T+GRTTL GEGLQH+DG+S + A++IPNCV 
Sbjct: 607 FYSMFGLQRIGDLAWAAGDMRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVP 666

Query: 672 YDPAYAYELAVILDEGMRRMMERGDDVFYYITVTNENEAQPSLPPGVQQGILRGLYCLD- 730
           YDP +A+E+AVI+ +G++RM+E  +DVFYYIT+ NEN  QP L  G +Q I++GLY L  
Sbjct: 667 YDPTFAHEVAVIMQDGLKRMIENQEDVFYYITLMNENYPQPGLKEGQEQDIIKGLYLLQE 726

Query: 731 --SKPGAAVRLLGSGPILKEAAAAAALLQQHWQIPAEVWSVTSYTELARDGVAAQRAQRL 788
              K    V+L+GSG IL+E  AAA LL+  W I ++VWS  S+T LARDG   +R   L
Sbjct: 727 GAKKSKNRVQLMGSGTILREVIAAADLLKDDWGIVSDVWSAPSFTLLARDGQDVERWNML 786

Query: 789 --TGSATLPYVTQQLQGSAAPVIAVSDYIRSLPESIRAFVPAD--YVTLGTDGFGRSDTR 844
               +  + +VTQ LQG++ P++  +DY+R+  E +RAF+P +  Y  LGTDGFGRSD+R
Sbjct: 787 HPADAPRVAHVTQSLQGTSGPIVVATDYMRTFAEQVRAFIPKERTYKVLGTDGFGRSDSR 846

Query: 845 VNLRDFFEIDARWIAYTAL 863
             LR+FFE++  ++   AL
Sbjct: 847 AKLREFFEVNRYFVTVAAL 865


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,786,473
Number of extensions: 77392
Number of successful extensions: 218
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 1
Length of query: 893
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 803
Effective length of database: 703,797
Effective search space: 565148991
Effective search space used: 565148991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)