BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3857.p
         (103 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096174|ref|YP_001101249.1| hypothetical protein HEAR3019 [...   177   1e-46

>gi|134096174|ref|YP_001101249.1| hypothetical protein HEAR3019
           [Herminiimonas arsenicoxydans]
          Length = 104

 Score =  177 bits (449), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 92/102 (90%)

Query: 2   SDVQSWIKETVTQNPVVLFMKGTAQFPQCGFSGKAIQLLKASGAENIVTVNVLESPDVRQ 61
            DVQSWIKETVTQNPVVLFMKGTAQFPQCGFSGKAI LLK SG  ++VTVNVL+  +VRQ
Sbjct: 3   DDVQSWIKETVTQNPVVLFMKGTAQFPQCGFSGKAIALLKESGVTDLVTVNVLDDAEVRQ 62

Query: 62  GIKEYSNWPTIPQLYVKGEFIGGSDIMSEMYASGELQTLIKG 103
           GIK++S WPT+PQLYVKGEFIGGSDIM+EM+ASGELQ L+K 
Sbjct: 63  GIKDFSQWPTVPQLYVKGEFIGGSDIMNEMFASGELQALLKA 104


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 187,822
Number of extensions: 6119
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 1,000,347
Length adjustment: 68
Effective length of query: 35
Effective length of database: 776,287
Effective search space: 27170045
Effective search space used: 27170045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 122 (51.6 bits)