BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3854.p (249 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 421 e-119 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 142 1e-35 gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 139 1e-34 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 137 6e-34 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 130 6e-32 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 421 bits (1083), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/245 (84%), Positives = 230/245 (93%) Query: 5 TSSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGQI 64 +S L+V GL+KSYGARQVVRDV+++V SGEV+GLLGPNGAGKTTSFYMIVGLVPSD G+I Sbjct: 2 SSKLIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRI 61 Query: 65 DLDGAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRDEIEG 124 +LDG ISR PIHKRA LGLSYLPQEASVFRKLSVEDNIRAVLEL++ GKALS+++IE Sbjct: 62 ELDGVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQ 121 Query: 125 RLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEI 184 RL+ LL +LQIEKLRE+QALSLSGGERRRVEIARALAT+PRFVLLDEPFAG+DPIAVIEI Sbjct: 122 RLDTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEI 181 Query: 185 QRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLG 244 QRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQG VLASG P++IIA+ESVRRVYLG Sbjct: 182 QRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYLG 241 Query: 245 EHFRM 249 EHFRM Sbjct: 242 EHFRM 246 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 142 bits (359), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 138/247 (55%), Gaps = 10/247 (4%) Query: 8 LVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGQIDLD 67 L + + K +G Q + DV++++ G++ GL+GPNGAGKTT F +I GL +D G +L Sbjct: 11 LNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFELA 70 Query: 68 GAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEG--------KALSR 119 G S H A G++ Q +F +++ +N+ +R +G KA + Sbjct: 71 GKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAARQ 130 Query: 120 DE--IEGRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGID 177 +E I R LL + I + A LS G++RR+EIARALATDP+ + LDEP AG++ Sbjct: 131 EEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 190 Query: 178 PIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANES 237 + ++ ++ +K G +L+ +H+V+ +G+CDR +++ G +A G P ++ N + Sbjct: 191 ATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQKNPA 250 Query: 238 VRRVYLG 244 V YLG Sbjct: 251 VIEAYLG 257 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 139 bits (351), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 15/249 (6%) Query: 3 MATSSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSD-- 60 M T+ L + GLK +YG Q V+ + ++VR GE++ L+G NGAGKTT+ I G +P Sbjct: 1 MTTTVLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRV 60 Query: 61 GGQIDLDGAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRD 120 G I+ G I L + L+ +P+ VF ++S+++N+ A +R+ Sbjct: 61 DGHIEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLM---------GAFTRN 111 Query: 121 EIEGRLNNLLHELQI-EKLRE---SQALSLSGGERRRVEIARALATDPRFVLLDEPFAGI 176 + +G +++ + +L+E A +LSGGE++ + +ARAL + P+ +LLDEP G+ Sbjct: 112 DKQGIADDMEKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGL 171 Query: 177 DPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANE 236 PI V +I ++R + +GI +L+ + N R L RAY++ G + G+ ++++ + Sbjct: 172 SPIMVEKIFEVIRSVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDP 231 Query: 237 SVRRVYLGE 245 VR YLGE Sbjct: 232 KVREAYLGE 240 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 137 bits (344), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 134/240 (55%), Gaps = 7/240 (2%) Query: 6 SSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGQID 65 S+L V+GL Y V+ DVS+EV G++ +LG NGAGK+T I+GL P G+I Sbjct: 2 SNLSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEIL 61 Query: 66 LDGAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRDEIEGR 125 +G ++ H G+S +P+ VF ++SV +N+ L A+ R+ + R Sbjct: 62 WNGRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENL--ALGAFLVTNSAVVRERL-AR 118 Query: 126 LNNLLHELQIEKLRESQ-ALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEI 184 + + L K R +Q A ++SGGE+ V I R L +P+ +++DEP G+ P+ V E Sbjct: 119 VYEIFPRL---KERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKEN 175 Query: 185 QRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLG 244 ++R + GI VL+ + N R+TL I Y+++QG V+A G EE+ +N+ VR Y G Sbjct: 176 FNVIRRINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYFG 235 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 130 bits (327), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 133/237 (56%), Gaps = 5/237 (2%) Query: 7 SLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGQIDL 66 S+ V+ + K +G + DVS+E +GE+ LLGP+G GKTT +I GL D GQ+ L Sbjct: 2 SIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 67 DGAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRDEIEGRL 126 DG S + +R + ++ Q ++F+ ++V +NI L +R + S I+ ++ Sbjct: 62 DGEDASARHVRERQ---VGFVFQHYALFKHMTVFENIAFGLRVRPAATRP-SESVIKEKV 117 Query: 127 NNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQR 186 LL +Q++ L + LSGG+R+R+ +ARALA +PR +LLDEPF +D E++R Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 187 IVRFLK-ERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVY 242 +R L E + + H+ E L + D+ ++N+G V G P+++ N + VY Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVY 234 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.139 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 458,862 Number of extensions: 19696 Number of successful extensions: 195 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 47 Length of query: 249 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 170 Effective length of database: 740,042 Effective search space: 125807140 Effective search space used: 125807140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)